View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21405_low_7 (Length: 278)
Name: NF21405_low_7
Description: NF21405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21405_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 263
Target Start/End: Original strand, 41555854 - 41556110
Alignment:
| Q |
12 |
atgaaacaacagagattagcccacttctactcagcggccccacacgccacatttattttgctttgtgcatttgca----atattgacaaacaaataattg |
107 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41555854 |
atgaaacaatagagattagcccacttctactcagcggccccacacgccacatttattttgctttgtgcatttgcagtatatattgacaaacaaataattg |
41555953 |
T |
|
| Q |
108 |
acacaccatatcttctgaattggacacatgattggacacggttgatacattagtacacaccaaatcttctgaattcagccacatatataaatcaaccaac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41555954 |
acacaccatatcttctgaattggacacatgattggacacggttgatacattagtacacaccaaatcttctgaatttagccacatatataaatcaaccaac |
41556053 |
T |
|
| Q |
208 |
catgttcaacctggcac-aaaacaaatctcaaatccactccatgtgactcaagaaac |
263 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41556054 |
catgttcaacctggcacaaaaacaaatctcaaatccactccttgtgactcaagaaac |
41556110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 41569673 - 41569763
Alignment:
| Q |
138 |
attggacacggttgatacattagtacacaccaaatcttctgaattcagccacatatataaatcaaccaaccatgttcaacctggcacaaaa |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41569673 |
attggacacggttgatacattagtacacaccaaatcttctgaattcagccacatatataaatcaaccaaccatgttcaacctggcacaaaa |
41569763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University