View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21405_low_8 (Length: 226)
Name: NF21405_low_8
Description: NF21405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21405_low_8 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: scaffold0050 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 73792 - 73565
Alignment:
| Q |
1 |
catttttgcagttgttcttatatttattttatagaacatgttacataccaatataaatcattatttttagtcttttttaagtggtttctaacaagtttat |
100 |
Q |
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| T |
73792 |
catttttgcagttgttcttatatttattttatagaacatgttacataccaatataaatcattatttttagtcttttttaagtggtttataacaagtttat |
73693 |
T |
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| Q |
101 |
ttaacgattatatgatttgagcaaatgg--ttgcctattgatctacatttgagatttatgcttctttacggtaagctttgattctagtttgtatatatgc |
198 |
Q |
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|||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
73692 |
ttaacgattatatgatttgagcaaatgggtttacctattgatccacatttgagatttatgcttctttacggtaagctttgattctagttcgtatatatgc |
73593 |
T |
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| Q |
199 |
taaatcttagagatatattttttgtaaa |
226 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
73592 |
taaatcttagagatatattttttgtaaa |
73565 |
T |
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