View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21406_high_10 (Length: 441)

Name: NF21406_high_10
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21406_high_10
NF21406_high_10
[»] chr2 (4 HSPs)
chr2 (16-241)||(44911826-44912049)
chr2 (278-430)||(44911676-44911828)
chr2 (268-431)||(3768993-3769156)
chr2 (229-269)||(3768575-3768615)
[»] chr1 (3 HSPs)
chr1 (268-431)||(3928561-3928724)
chr1 (97-189)||(3928981-3929073)
chr1 (1-82)||(3929116-3929196)
[»] chr4 (3 HSPs)
chr4 (268-428)||(6353914-6354074)
chr4 (94-269)||(6354454-6354636)
chr4 (3-95)||(6354668-6354759)
[»] chr6 (1 HSPs)
chr6 (342-426)||(30372845-30372929)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 44912049 - 44911826
Alignment:
Q  16 cattggatcaaatatttactatgatctctaacttttataaccacagcataatcttttcagcctttcaattcatccctttgctgcaatttcttttcttgtt 115  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  44912049 cattggatcaaatctttactatgatctctaacttttataaccacagcgtaatcttttcagcctttcgtttcatccctttgctgcaatttcttttcttgtt 44911950  T
Q  116 tcaaatttgagtttccaaattctttggcaagactattttgttgggataatagttttatttttataatgtaccatatgattgtttgttgccactctttaca 215  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||  |||||||||||||||| |||||||||    
T  44911949 tcaaatttgagtttccaaattctttggcaaggctattttgttggtataatagttttatttttataatgtacc--atgattgtttgttgccgctctttaca 44911852  T
Q  216 caatcccactatcaaagaaacaacca 241  Q
    ||||||||||||||||||||||||||    
T  44911851 caatcccactatcaaagaaacaacca 44911826  T

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Target: chr2; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 278 - 430
Target Start/End: Complemental strand, 44911828 - 44911676
Alignment:
Q  278 ccatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaacctaatgagaattaatagaaacgagaagatggaagatagatgaat 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44911828 ccatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaacctaatgaaaattaatagaaacgagaagatggaagatagatgaat 44911729  T
Q  378 ggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctctgt 430  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  44911728 ggcatgaacggtaaattggatgttttatggtagttaaattcctgaccctctgt 44911676  T

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Target: chr2; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 268 - 431
Target Start/End: Original strand, 3768993 - 3769156
Alignment:
Q  268 ttgagacaatccatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaacctaatgagaattaatagaaacgagaagatggaag 367  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  3768993 ttgacacaatccatgggaagaaggtatgaaacaagaggggttggtgttgctgtgatgacgatgaaccaaatgaaaattaatagaaacgagaagatggaag 3769092  T
Q  368 atagatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctctgtg 431  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  3769093 atagatgaatggcatgaacggtaaattggaggttctatggtagttaaattcctgaccccctgtg 3769156  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 3768575 - 3768615
Alignment:
Q  229 aaagaaacaaccagcaaagagttttgttgcaaatgcttgtt 269  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3768575 aaagaaacaaccagcaaagagttttgttgcaaatgcttgtt 3768615  T

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Target: chr1 (Bit Score: 136; Significance: 9e-71; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 268 - 431
Target Start/End: Complemental strand, 3928724 - 3928561
Alignment:
Q  268 ttgagacaatccatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaacctaatgagaattaatagaaacgagaagatggaag 367  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  3928724 ttgacacaatctatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaaccgaatgaaaattaatagaaacgagaagatggaag 3928625  T
Q  368 atagatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctctgtg 431  Q
    ||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  3928624 atagatgaatgacatgaacggtaaattgaaggttctatggtagttaaattcctgaccctctgtg 3928561  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 3929073 - 3928981
Alignment:
Q  97 tgcaatttcttttcttgtttcaaatttgagtttccaaattctttggcaagactattttgttgggataatagttttatttttataatgtaccat 189  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3929073 tgcaatttcttttcttgtttcaaatttgactttccaaattctttggcaaggctattttgttgggataatagttttatttttataatgtaccat 3928981  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 3929196 - 3929116
Alignment:
Q  1 ggatcaaatggtgaccattggatcaaatatttactatgatctctaacttttataaccacagcataatcttttcagcctttca 82  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  3929196 ggatcaaatggtgaccattggatcaa-tctttactatgatctctaacttttataaccacagcgtaatcttttcaccctttca 3929116  T

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Target: chr4 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 6354074 - 6353914
Alignment:
Q  268 ttgagacaatccatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaacctaatgagaattaatagaaacgagaagatggaag 367  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  6354074 ttgacacaatccatgggaagaaggtatgaaacaagatgggttggtgttgttgtgatgacgatgaaccgaatgaaaattaatagaaacgagaagatggaag 6353975  T
Q  368 atagatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctct 428  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||    
T  6353974 atagatgaatggcatgaacggtaaattggaggttctatggtagtttaattcatgaccctct 6353914  T

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Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 94 - 269
Target Start/End: Complemental strand, 6354636 - 6354454
Alignment:
Q  94 tgctgcaatttcttttcttgtttcaaatttgagtttccaaattctttggcaagactattttgttgggataatagttttatttttataatgtaccat---- 189  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||  ||        
T  6354636 tgctgcaatttcttttcttgtttcaaatttgactttccaaattctttggcaagactattttgttgggataataattttatttttataatttataatgtac 6354537  T
Q  190 -atgattgtttgttgccactctttacacaat-cccactatc-aaagaaacaaccagcaaagagttttgttgcaaatgcttgtt 269  Q
     |||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6354536 catgattgtttgttgccgctctttacacaatccccactatcaaaagaaacaaccagcaaagagttttgttgcaaatgcttgtt 6354454  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 6354759 - 6354668
Alignment:
Q  3 atcaaatggtgaccattggatcaaatatttactatgatctctaacttttataaccacagcataatcttttcagcctttcaattcatccctttg 95  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||   |||| |||||||||||||  ||||||||||||    
T  6354759 atcaaatggtgaccattggatcaa-tctttactatgatctctaacttttataaccacattgtaatattttcagcctttcgtttcatccctttg 6354668  T

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Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 342 - 426
Target Start/End: Original strand, 30372845 - 30372929
Alignment:
Q  342 aattaatagaaacgagaagatggaagatagatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccct 426  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||    
T  30372845 aattaatagaaacgagaagatggaagatagatgaatgacatgaacggtaaattggaggatctatggtagttaaattcctgaccct 30372929  T

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