View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21406_high_12 (Length: 428)

Name: NF21406_high_12
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21406_high_12
NF21406_high_12
[»] chr6 (7 HSPs)
chr6 (83-161)||(10195656-10195734)
chr6 (293-379)||(10195487-10195572)
chr6 (11-59)||(10196065-10196113)
chr6 (217-273)||(10195582-10195638)
chr6 (83-140)||(1608089-1608146)
chr6 (83-140)||(4857022-4857079)
chr6 (83-140)||(11550203-11550260)
[»] chr8 (3 HSPs)
chr8 (83-193)||(16251653-16251763)
chr8 (83-140)||(23136419-23136476)
chr8 (83-140)||(45531726-45531783)
[»] chr2 (4 HSPs)
chr2 (83-159)||(36722006-36722082)
chr2 (86-177)||(23258374-23258465)
chr2 (82-140)||(20103350-20103408)
chr2 (83-140)||(41747321-41747378)
[»] chr4 (1 HSPs)
chr4 (105-190)||(14275786-14275871)
[»] chr5 (1 HSPs)
chr5 (83-140)||(9663123-9663180)


Alignment Details
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 83 - 161
Target Start/End: Complemental strand, 10195734 - 10195656
Alignment:
Q  83 tattttattttgatagtacacgtgacaaccttttgttcataggagcatttaatgttttgtttcacataaacatcaaaat 161  Q
    ||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10195734 tattttattttaatagtacacatggcaaccttttgttcataggagcatttaatgttttgtttcacataaacatcaaaat 10195656  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 379
Target Start/End: Complemental strand, 10195572 - 10195487
Alignment:
Q  293 ataaacattgtcttaactactaatgaagcattgatttccaatnnnnnnnncttattttgaattcaatgatatttccataaccgaatt 379  Q
    ||||||||||||||||||||||||||||||||||||||| |         ||||||| |||||||||||||||||||||||||||||    
T  10195572 ataaacattgtcttaactactaatgaagcattgatttccga-gaaaaaaacttatttagaattcaatgatatttccataaccgaatt 10195487  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 10196113 - 10196065
Alignment:
Q  11 ttattctcatatataagtttatgaatctctatatctattataaacattt 59  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  10196113 ttattctcatatataaatttatgaatctctatctctattataaacattt 10196065  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 10195638 - 10195582
Alignment:
Q  217 atttacatgttgaattactctgatgaaaggcaaccgatgggttaatgagattcttaa 273  Q
    ||||||| ||||||||||||||||||   |||||||||| |||||||||||||||||    
T  10195638 atttacacgttgaattactctgatgagccgcaaccgatgagttaatgagattcttaa 10195582  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 1608146 - 1608089
Alignment:
Q  83 tattttattttgatagtacacgtgacaaccttttgttcataggagcatttaatgtttt 140  Q
    |||||||||||||||||||||||| ||||||| | || | ||| ||||||||||||||    
T  1608146 tattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgtttt 1608089  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 4857079 - 4857022
Alignment:
Q  83 tattttattttgatagtacacgtgacaaccttttgttcataggagcatttaatgtttt 140  Q
    |||||||||||||||||||||||| ||||||| | || | ||| ||||||||||||||    
T  4857079 tattttattttgatagtacacgtggcaaccttatattgaaaggtgcatttaatgtttt 4857022  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 11550203 - 11550260
Alignment:
Q  83 tattttattttgatagtacacgtgacaaccttttgttcataggagcatttaatgtttt 140  Q
    |||||||||||||||||||||||| |||| || | || | ||| ||||||||||||||    
T  11550203 tattttattttgatagtacacgtggcaactttatattgaaaggtgcatttaatgtttt 11550260  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 83 - 193
Target Start/End: Original strand, 16251653 - 16251763
Alignment:
Q  83 tattttattttgatagtacacgtgacaaccttttgttcataggagcatttaatgttttgtttcacataaacatcaaaatgttatttgctaaaatttgtag 182  Q
    |||||||||||||||||||||||||||||||| | || | | | |||||| || |||| ||||| ||| |||||||||||||||||||||||||| | ||    
T  16251653 tattttattttgatagtacacgtgacaaccttatattaaaatgtgcattttattttttatttcatatacacatcaaaatgttatttgctaaaattcgaag 16251752  T
Q  183 gagtatttaat 193  Q
    || ||||||||    
T  16251753 gaatatttaat 16251763  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 23136419 - 23136476
Alignment:
Q  83 tattttattttgatagtacacgtgacaaccttttgttcataggagcatttaatgtttt 140  Q
    |||||||||||||||||| ||||||||||||| | || | |||  |||||||||||||    
T  23136419 tattttattttgatagtagacgtgacaaccttatattgaaaggtacatttaatgtttt 23136476  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 45531783 - 45531726
Alignment:
Q  83 tattttattttgatagtacacgtgacaaccttttgttcataggagcatttaatgtttt 140  Q
    |||||||||||||||||||||||| ||||||| | || | ||| |||||| |||||||    
T  45531783 tattttattttgatagtacacgtggcaaccttatattgaaaggtgcatttgatgtttt 45531726  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 36722006 - 36722082
Alignment:
Q  83 tattttattttgatagtacacgtgacaaccttttgttcataggagcatttaatgttttgtttcacataaacatcaaa 159  Q
    |||||||||||||||||||||||||||||||| | || | ||| |||||||||||||| ||||| ||| ||||||||    
T  36722006 tattttattttgatagtacacgtgacaaccttatattgaaaggtgcatttaatgttttctttcatatacacatcaaa 36722082  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 86 - 177
Target Start/End: Original strand, 23258374 - 23258465
Alignment:
Q  86 tttattttgatagtacacgtgacaaccttttgttcataggagcatttaatgttttgtttcacataaacatcaaaatgttatttgctaaaatt 177  Q
    ||||||||||||||||||||| | ||||| | || | ||| |||||||||||||| ||||||||  ||| ||||||||||| ||||||||||    
T  23258374 tttattttgatagtacacgtggctaccttatattgaaaggtgcatttaatgttttctttcacatgcacaccaaaatgttatgtgctaaaatt 23258465  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 20103350 - 20103408
Alignment:
Q  82 ttattttattttgatagtacacgtgacaaccttttgttcataggagcatttaatgtttt 140  Q
    |||||||||||||||||||||||||| || ||| | || | ||| ||||||||||||||    
T  20103350 ttattttattttgatagtacacgtgagaagcttatattgaaaggtgcatttaatgtttt 20103408  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 41747321 - 41747378
Alignment:
Q  83 tattttattttgatagtacacgtgacaaccttttgttcataggagcatttaatgtttt 140  Q
    |||||||||||||||||||| ||| ||||||| | || | ||| ||||||||||||||    
T  41747321 tattttattttgatagtacatgtggcaaccttatattgaaaggtgcatttaatgtttt 41747378  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 190
Target Start/End: Original strand, 14275786 - 14275871
Alignment:
Q  105 tgacaaccttttgttcataggagcatttaatgttttgtttcacataaacatcaaaatgttatttgctaaaatttgtaggagtattt 190  Q
    |||||||||| | || | ||| |||||||||||||| ||| | ||| |||||||||||||||||||||||||| | ||||||||||    
T  14275786 tgacaaccttatattgaaaggtgcatttaatgttttattttatatacacatcaaaatgttatttgctaaaattcggaggagtattt 14275871  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 9663180 - 9663123
Alignment:
Q  83 tattttattttgatagtacacgtgacaaccttttgttcataggagcatttaatgtttt 140  Q
    |||||||||||||||||||||||||||||||| | || | ||| ||||||||||||||    
T  9663180 tattttattttgatagtacacgtgacaaccttatattaaaaggtgcatttaatgtttt 9663123  T

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