View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21406_high_15 (Length: 403)
Name: NF21406_high_15
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21406_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 29 - 389
Target Start/End: Complemental strand, 576673 - 576310
Alignment:
| Q |
29 |
atgattatttagatcttccactgcagtaatatcattgacatcattacttaattcctcagcaagttcttctactacttc---ctcgttgtcatggtgatca |
125 |
Q |
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| T |
576673 |
atgataatttagattttccactgcagtaatatcattgacatcattatttaattcctcagcaagttcttcttctacttcttcctcgttgtcgtggtgatca |
576574 |
T |
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| Q |
126 |
ttttcatcatcatggtctttccaatccctaatgaacaatttctgaagcaatggacaagtgataatgatagtaccaaccttcttccagttacaatcaatta |
225 |
Q |
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| T |
576573 |
tcttcatcatcatggtctttccaatccctaatgaacaatttctgaagcaatggacaagtgataatgatagtaccaaccttcttccagttacaatcaatta |
576474 |
T |
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| Q |
226 |
gggtcatttccttcagggaccttaaacttaagaaaaactctgttgtgcaataatagttagggaaaataacatgttttaaagtcaatgtcacaagattttg |
325 |
Q |
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| T |
576473 |
gggtcatttccttcagggaccttaaacttaagaaaaactctgttgtgcaataatagttagggaaaataacatgttttaaagtcaatgtcacaagattttg |
576374 |
T |
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| Q |
326 |
aaaattaatggtagaaggaagtttgacgacttgactcatactaagttcaaacttggtcaatttt |
389 |
Q |
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| T |
576373 |
aaaattaatggtagaaggaagtttgatgacttgactcatactaagttcaaacttggtcaatttt |
576310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 576713 - 576746
Alignment:
| Q |
4 |
ttcacatatgacggtgatctcatgaatgattatt |
37 |
Q |
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| T |
576713 |
ttcacatatgacggtgatctcatgaatgattatt |
576746 |
T |
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