View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21406_high_24 (Length: 351)
Name: NF21406_high_24
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21406_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 6022819 - 6023142
Alignment:
| Q |
19 |
tatgcatgcaggtggaagacttcactattcagcgattgtgccttccacaggtgatcactgccgtcaatggaaccttaccaggaccaacaattaatgctcg |
118 |
Q |
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| T |
6022819 |
tatgcatgcaggtggaagacttcactattcagcgattgtgccttccacaggtgatcactgccgtcaatggaaccttaccaggaccaacaattaatgctcg |
6022918 |
T |
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| Q |
119 |
agagggtgacactgttatcattcatgtgttcaacaaatcaccctataatcttactcttcattggtaacatatttctctccttaccttcaataacaatatt |
218 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6022919 |
agagggtgacactgttatcattcatgtattcaacaaatcaccctataatcttactcttcattggtaacatatttctctccttaccttcaataacaatatt |
6023018 |
T |
|
| Q |
219 |
agagaaatatattaagcaagcacaccatggtttgaattcaagaactaatattattgactagtccacctgttaaatgtttcttatatttttatattttatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
6023019 |
agagaaatatattaagcaagcacaccatggtttgaattcaagaactaatattattgactagtcctcctgttaaacgtttcttatatttttatattttatt |
6023118 |
T |
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| Q |
319 |
acacatccatgcatgtagtataat |
342 |
Q |
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|||||||||||||||||||||||| |
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| T |
6023119 |
acacatccatgcatgtagtataat |
6023142 |
T |
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