View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21406_high_28 (Length: 280)
Name: NF21406_high_28
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21406_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 1086145 - 1086401
Alignment:
| Q |
7 |
cacagaccagtttatggcttattttgggccgaggttgagtcaaaccatggaaaattgaagaaaagtatgagctgttctcgttccagaatccaagtggagg |
106 |
Q |
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| T |
1086145 |
cacagaccggtttatggcttattttgggccgaggttgagtcaaaccatggaaaattgaagaaaagtatgagctgttctcgttccagaatccaagtggagg |
1086244 |
T |
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| Q |
107 |
aacttttaccatattctcacggatacactgagctaaactttttctaaaggcaggaggactaattgtgagatatgtgcagccgtgttcaagtaagctctct |
206 |
Q |
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| T |
1086245 |
aacttttaccatattctcacggatacactgagctaaactttttctaagggcaggaggactaattgtgagatatgtgcagccgtgttcaagtaagctctct |
1086344 |
T |
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| Q |
207 |
atcctattcatggatgctcgcaattttaaaaaattcagggctttttgctaaaaatat |
263 |
Q |
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| T |
1086345 |
atcctattcatggatgctcgcaatttaaaaaaattcagggctttttgctaaaaatat |
1086401 |
T |
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Back To:
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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 46765811 - 46765955
Alignment:
| Q |
11 |
gaccagtttatggcttattttgggccgaggttgagtcaaaccatggaaaattgaagaaaagtatgagctgttctcgttccagaatccaagtggaggaact |
110 |
Q |
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| T |
46765811 |
gacctgtttatggcatattttgggctgaggttgagtcacctcacggaaaattgaagaaaagtatgagttgttctcagtcaagaattgagttggacgaact |
46765910 |
T |
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| Q |
111 |
tttaccatattctcacggatacactgagctaaactttttctaaag |
155 |
Q |
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| T |
46765911 |
tttgccatattccggtggatatactgaactaaactttttctaaag |
46765955 |
T |
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