View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21406_high_32 (Length: 262)
Name: NF21406_high_32
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21406_high_32 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 45 - 262
Target Start/End: Complemental strand, 25153893 - 25153670
Alignment:
| Q |
45 |
aatctaagtgtcggatctcaaaccaagtttctcgaggttgaagagaaaactttcaactaagtgaccacccag------gagatcaatttactacaaatct |
138 |
Q |
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| T |
25153893 |
aatctaagtgtcggatctcgaaccaagtttctcgaggctgaagagaaaactctcaactaaatgaccacccagactcaggagaccgatttactacaaatct |
25153794 |
T |
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| Q |
139 |
aacaaacattagagctatattgcctaatctaaatctaacaaaacaatcttgaaaatactaacctaaattagtacgagaaaaataaaatacatcttattta |
238 |
Q |
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| T |
25153793 |
aacaaacattacagctatattgcctaatctaaatctaacaaaacaatcttgaaaatactaacctaaattagtacgagaaaaataaaatacatcttattta |
25153694 |
T |
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| Q |
239 |
cctaatttcattcaataacacact |
262 |
Q |
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| T |
25153693 |
cctaatttcattcaataacacact |
25153670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 6886654 - 6886598
Alignment:
| Q |
53 |
tgtcggatctcaaaccaagtttctcgaggttgaagaga-aaactttcaactaagtga |
108 |
Q |
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| T |
6886654 |
tgtcgggtttcaaaccgagtttctcgaggttgaagagagaaactttcaaccaagtga |
6886598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 23431787 - 23431730
Alignment:
| Q |
53 |
tgtcggatctcaaaccaagtttctcgaggttgaagaga-aaactttcaactaagtgac |
109 |
Q |
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| T |
23431787 |
tgtcgggtctcaaaccgagtttctagaagttgaagagagaaactttcaactaagtgac |
23431730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 14433893 - 14433844
Alignment:
| Q |
61 |
ctcaaaccaagtttctcgaggttgaagaga-aaactttcaactaagtgac |
109 |
Q |
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|||||||| ||||||||||||||||||||| ||||| ||||| ||||||| |
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| T |
14433893 |
ctcaaaccgagtttctcgaggttgaagagagaaactctcaaccaagtgac |
14433844 |
T |
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