View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21406_high_47 (Length: 203)

Name: NF21406_high_47
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21406_high_47
NF21406_high_47
[»] chr1 (2 HSPs)
chr1 (1-191)||(23336360-23336548)
chr1 (2-35)||(47469070-47469103)
[»] chr8 (2 HSPs)
chr8 (1-35)||(8740681-8740715)
chr8 (1-35)||(28378848-28378882)
[»] chr7 (2 HSPs)
chr7 (1-35)||(22706053-22706087)
chr7 (1-35)||(42887190-42887224)
[»] chr6 (1 HSPs)
chr6 (1-35)||(2816929-2816963)
[»] chr4 (2 HSPs)
chr4 (1-35)||(34773708-34773742)
chr4 (1-33)||(24680085-24680117)
[»] chr2 (2 HSPs)
chr2 (1-35)||(11050754-11050788)
chr2 (1-33)||(9330500-9330532)


Alignment Details
Target: chr1 (Bit Score: 121; Significance: 3e-62; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 23336548 - 23336360
Alignment:
Q  1 atatgcaggggctgaggttcgaactccggacacccaacacgttcaaaagaattaaagtattacannnnnnn-atcttattgttttggtttagttcaaaca 99  Q
    ||||||||||| || ||||| |||||||||||||| ||||||||||||||||| ||||||||||        ||||||| ||||||||||||||||||||    
T  23336548 atatgcaggggttgtggttcaaactccggacaccccacacgttcaaaagaattcaagtattacaatttttttatcttatggttttggtttagttcaaaca 23336449  T
Q  100 aaatttattcatattagaatactagtatttgattttaattcctcaaaatagactctaaaataaaatattagaaaaattcatttattttaata 191  Q
    |||||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23336448 aaatttattcatattagaatactact---tgattttaattcctcaaaatagactctaaaataaaatattagaaaaattcatttattttaata 23336360  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 47469103 - 47469070
Alignment:
Q  2 tatgcaggggctgaggttcgaactccggacaccc 35  Q
    ||||||||||||||||||||||| ||||||||||    
T  47469103 tatgcaggggctgaggttcgaaccccggacaccc 47469070  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 8740715 - 8740681
Alignment:
Q  1 atatgcaggggctgaggttcgaactccggacaccc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  8740715 atatgcaggggctgaggttcgaactccggacaccc 8740681  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28378848 - 28378882
Alignment:
Q  1 atatgcaggggctgaggttcgaactccggacaccc 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  28378848 atatgcaggggctgaggttcgaaccccggacaccc 28378882  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 22706087 - 22706053
Alignment:
Q  1 atatgcaggggctgaggttcgaactccggacaccc 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  22706087 atatgcaggggctgaggttcaaactccggacaccc 22706053  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42887190 - 42887224
Alignment:
Q  1 atatgcaggggctgaggttcgaactccggacaccc 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  42887190 atatgcaggggctgaggttcgaaccccggacaccc 42887224  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2816929 - 2816963
Alignment:
Q  1 atatgcaggggctgaggttcgaactccggacaccc 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  2816929 atatgcaggggctgagattcgaactccggacaccc 2816963  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 34773742 - 34773708
Alignment:
Q  1 atatgcaggggctgaggttcgaactccggacaccc 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  34773742 atatgcaggggctgaggttcgaaccccggacaccc 34773708  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 24680117 - 24680085
Alignment:
Q  1 atatgcaggggctgaggttcgaactccggacac 33  Q
    ||||||||||||||||||||||||||| |||||    
T  24680117 atatgcaggggctgaggttcgaactccagacac 24680085  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 11050788 - 11050754
Alignment:
Q  1 atatgcaggggctgaggttcgaactccggacaccc 35  Q
    |||||||||||||| ||||||||||||||||||||    
T  11050788 atatgcaggggctggggttcgaactccggacaccc 11050754  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9330532 - 9330500
Alignment:
Q  1 atatgcaggggctgaggttcgaactccggacac 33  Q
    |||||||||||||||||| ||||||||||||||    
T  9330532 atatgcaggggctgaggtgcgaactccggacac 9330500  T

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