View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21406_high_5 (Length: 546)
Name: NF21406_high_5
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21406_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 17 - 534
Target Start/End: Complemental strand, 53657903 - 53657375
Alignment:
| Q |
17 |
aataataatcaacattattaatacagttgatccagttggtaagaagtcgaatgataaagacctcattagtgcgcgacgggtaaatatctttgtctctgat |
116 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53657903 |
aataataatcaacattattaaaacagttgatccagttggtaagaagtccagtgataaagacctcgttagtgcgcgacgggtaaatatctttgtctctgat |
53657804 |
T |
|
| Q |
117 |
cattgatgtatctgagggactcaacttatctgaacttttaattagcaataaaaacaaaataatcaacggttcccacagaatcatcatcactaattattct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53657803 |
cattgatgtatctgagggactcaacttatctgaacttttaattagcaataaaaacaaaataatcaacggttcccacagaatcatcatcactaattattct |
53657704 |
T |
|
| Q |
217 |
aacacatt-----------ataggagattcatactcctctgttatccttgtttactaaaacgtgggaacgacgccgtatggacagtccattagcatagat |
305 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53657703 |
aacacattgaaaccatagtataggagaatcatactcctctgttatccttgtttactaaaacgtgggaacgacgccgtatggacagtccattagcatagat |
53657604 |
T |
|
| Q |
306 |
gaaggaactgagagaggatcagcagggttatagagacggtccacatccgagtcaatttcggttcgtttagcgaaccggcctttaattctaggccgggttt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53657603 |
gaaggaactgagagaggatcagcagggttatagagacggtccacatccgagtcaatttcggttcgtttagcgaaccggcctttaattctaggccgggttt |
53657504 |
T |
|
| Q |
406 |
ctgcataagcttttcgtgaagcgtaacgaatagtcttctcgaattttcggttcttccttttctctctgtacctcataaccctcgcttcacgatccattcc |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53657503 |
ctgcataagcttttcgtgaagcgtaacgaatagtcttctcgaattttcggttcttccttttctctctgtacctcataaccctcgcttcacgatccattcc |
53657404 |
T |
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| Q |
506 |
acataattgtgttgctccttgcacccctt |
534 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
53657403 |
acataattgtgttgctccttgcacccctt |
53657375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 433 - 534
Target Start/End: Complemental strand, 29430561 - 29430460
Alignment:
| Q |
433 |
gaatagtcttctcgaattttcggttcttccttttctctctgtacctcataaccctcgcttcacgatccattccacataattgtgttgctccttgcacccc |
532 |
Q |
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| T |
29430561 |
gaatagtcttctcgaattttcagttcttcctcttctctctgtacctcataaccctcgcttcacgatccattccacataattgtgttgctccttgcacccc |
29430462 |
T |
|
| Q |
533 |
tt |
534 |
Q |
| |
|
|| |
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|
| T |
29430461 |
tt |
29430460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 384 - 501
Target Start/End: Complemental strand, 48759584 - 48759467
Alignment:
| Q |
384 |
cctttaattctaggccgggtttctgcataagcttttcgtgaagcgtaacgaatagtcttctcgaattttcggttcttccttttctctctgtacctcataa |
483 |
Q |
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|||||||| ||||||| ||||| ||||||||||| || ||||| |||||||| |||||||||||| |||| |||||||| ||||| ||||||||||||| |
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| T |
48759584 |
cctttaatcctaggcctagtttccgcataagctttacgagaagcataacgaattgtcttctcgaatcttcgattcttcctcttctccctgtacctcataa |
48759485 |
T |
|
| Q |
484 |
ccctcgcttcacgatcca |
501 |
Q |
| |
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|||| ||||||||||||| |
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| T |
48759484 |
ccctagcttcacgatcca |
48759467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 384 - 493
Target Start/End: Original strand, 3419926 - 3420035
Alignment:
| Q |
384 |
cctttaattctaggccgggtttctgcataagcttttcgtgaagcgtaacgaatagtcttctcgaattttcggttcttccttttctctctgtacctcataa |
483 |
Q |
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|||||||||||||| | ||||||||||||||||||| |||||||| |||||||||||||||||| ||| ||||| || ||||||||||||||||||| |
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| T |
3419926 |
cctttaattctaggtctagtttctgcataagcttttctcgaagcgtagcgaatagtcttctcgaatcttctattctttctcttctctctgtacctcataa |
3420025 |
T |
|
| Q |
484 |
ccctcgcttc |
493 |
Q |
| |
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|||| ||||| |
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| T |
3420026 |
ccctagcttc |
3420035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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