View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21406_high_9 (Length: 445)
Name: NF21406_high_9
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21406_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 50 - 432
Target Start/End: Original strand, 15754213 - 15754593
Alignment:
| Q |
50 |
ttcattactcatgtttatatatgtttatcattgaatttgatagtttatgatctataattaaattctactattatatttatagataactgcgcagtacaat |
149 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15754213 |
ttcattactcatgtttatat--gttgatcattgaatttgatagtttatgatctataattaaattctactattatatttatagataactgcgaagtacaat |
15754310 |
T |
|
| Q |
150 |
ttcaaagacctgagatttctaccaagaaaaataactgcgaagaaactctagttggagttttcagcctagttgatgcttgtagatcaggtgctttagaggc |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15754311 |
ttcaaagacctgagatttctaccaagaaaaataactgtgaagaaactctagttggagttttcagcctagttgatgcttgtagatcaggtgctttagaggc |
15754410 |
T |
|
| Q |
250 |
aatggaagagctaaagttattaggagtcagatcagtcatgctgacaggagatagctctcaggttgctatgtatgttcagagtcaggtatgatcaataatg |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15754411 |
aatggaagagctaaagttattaggagtcagatcagtcatgctgacaggagatagctctcaggttgctatgtatgttcagagtcaggtatgatcaataatg |
15754510 |
T |
|
| Q |
350 |
catatatttctaaaactaaaatgaagattttgttattaaccttataagttttgaccattaatgcttcatttgtttacttattc |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15754511 |
catatatttctaaaactaaaatgaagattttgttattaaccttataagttttgaccattaatgcttcatttgtttacttattc |
15754593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University