View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21406_low_1 (Length: 805)
Name: NF21406_low_1
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21406_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 638; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 89 - 786
Target Start/End: Original strand, 1924216 - 1924914
Alignment:
| Q |
89 |
tgttgtgagatctactccgttgcgtgaaatgaagactgacgatctattttccagaatgcagcatttgcagctgttgcttgagcgatttatggcttgtcgt |
188 |
Q |
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| T |
1924216 |
tgttgtgagatctactccgttgcgtgaaatgaagactgacgatctattttccagaatgcagcatttgcagctgttgcttgagcgatttatggcttgtcgt |
1924315 |
T |
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| Q |
189 |
ccaacaggtttgtaatgattagaacataaaaagtttggatttagattgtgtgtagtgtgattgcatgcggttaggatcgtatgatcaagattagacaatc |
288 |
Q |
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| T |
1924316 |
ccaacaggtttgtaatgattagaacataaaaagtttggatttagattgtgtgtagtgtgattgcatgcggttaggatcgtatgatcaagattagacaatc |
1924415 |
T |
|
| Q |
289 |
catattttgatacagtttttccttcnnnnnnnnnnnnnnn-ggtcaggtagccagcctagtggttagaattcaccttataaacagttttttcttctttat |
387 |
Q |
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| T |
1924416 |
catattttgatacagtttttccttcttttttttttttttttggtcaggtagccagcctagtggttagaattcaccttataaacagttttttcttctttat |
1924515 |
T |
|
| Q |
388 |
atctaaaataccgatcttacaatttggactgcctaatcttaaccagacggtccataagtggctgaatgcgcgcagggttgtgtatttttgttagtcatgt |
487 |
Q |
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| T |
1924516 |
atctaaaataccgatcttactatttggactgcctgatcttaaccagacggtccataagtggctgaatgcgcgcagggttgtgtatttttgttagtcatgt |
1924615 |
T |
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| Q |
488 |
cagtgtcaaataattagattgagtttgcaagaattaaaaagcaaaaacctctatatttgcatgaccaaaactcttcatgcatcttacattattcttatac |
587 |
Q |
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| T |
1924616 |
cagtgtcaaataattagattgagtttgcaagaattaaaaagcaaaaacctctatatttgcatgaccaaaactcttcatgcatcttacattattcttatac |
1924715 |
T |
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| Q |
588 |
ttagttgccaactggttttgtaaaaatgcatactttcaaatttcaatgaattcaaacaaaattgcatatataagcacaagaagcaatctgatgcttattt |
687 |
Q |
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| T |
1924716 |
ttagttgccaactggttttgtaaaaatgcatactttcaaatttcaatgaattcaaacaaaattgcatatataagcacaagaagcaatctgatgcttattt |
1924815 |
T |
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| Q |
688 |
gaattgaacaggtagagcaaagacacatagaatggtgatagtggcactctacccaattgtgaaggagagttttcaaacatatcatgacatgacaagcat |
786 |
Q |
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| T |
1924816 |
gaattgaacaggtagagcaaagacacatagaatggtgatagtggcactctacccaattgtgaaggagagttttcaaacatatcatgacatgacaagcat |
1924914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 694 - 769
Target Start/End: Original strand, 1329219 - 1329294
Alignment:
| Q |
694 |
aacaggtagagcaaagacacatagaatggtgatagtggcactctacccaattgtgaaggagagttttcaaacatat |
769 |
Q |
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| T |
1329219 |
aacaggaacagcaaagagccatagaattgtgatagtggctctttatccaattgtgaaggagagttttcaatcatat |
1329294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 329 - 368
Target Start/End: Complemental strand, 38792334 - 38792295
Alignment:
| Q |
329 |
ggtcaggtagccagcctagtggttagaattcaccttataa |
368 |
Q |
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| T |
38792334 |
ggtcatgtagccagcctagtggctagaattcaccttataa |
38792295 |
T |
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