View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21406_low_11 (Length: 441)
Name: NF21406_low_11
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21406_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 44912049 - 44911826
Alignment:
| Q |
16 |
cattggatcaaatatttactatgatctctaacttttataaccacagcataatcttttcagcctttcaattcatccctttgctgcaatttcttttcttgtt |
115 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44912049 |
cattggatcaaatctttactatgatctctaacttttataaccacagcgtaatcttttcagcctttcgtttcatccctttgctgcaatttcttttcttgtt |
44911950 |
T |
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| Q |
116 |
tcaaatttgagtttccaaattctttggcaagactattttgttgggataatagttttatttttataatgtaccatatgattgtttgttgccactctttaca |
215 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
44911949 |
tcaaatttgagtttccaaattctttggcaaggctattttgttggtataatagttttatttttataatgtacc--atgattgtttgttgccgctctttaca |
44911852 |
T |
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| Q |
216 |
caatcccactatcaaagaaacaacca |
241 |
Q |
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|||||||||||||||||||||||||| |
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| T |
44911851 |
caatcccactatcaaagaaacaacca |
44911826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 278 - 430
Target Start/End: Complemental strand, 44911828 - 44911676
Alignment:
| Q |
278 |
ccatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaacctaatgagaattaatagaaacgagaagatggaagatagatgaat |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44911828 |
ccatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaacctaatgaaaattaatagaaacgagaagatggaagatagatgaat |
44911729 |
T |
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| Q |
378 |
ggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctctgt |
430 |
Q |
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| T |
44911728 |
ggcatgaacggtaaattggatgttttatggtagttaaattcctgaccctctgt |
44911676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 268 - 431
Target Start/End: Original strand, 3768993 - 3769156
Alignment:
| Q |
268 |
ttgagacaatccatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaacctaatgagaattaatagaaacgagaagatggaag |
367 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
3768993 |
ttgacacaatccatgggaagaaggtatgaaacaagaggggttggtgttgctgtgatgacgatgaaccaaatgaaaattaatagaaacgagaagatggaag |
3769092 |
T |
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| Q |
368 |
atagatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctctgtg |
431 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
3769093 |
atagatgaatggcatgaacggtaaattggaggttctatggtagttaaattcctgaccccctgtg |
3769156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 3768575 - 3768615
Alignment:
| Q |
229 |
aaagaaacaaccagcaaagagttttgttgcaaatgcttgtt |
269 |
Q |
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| T |
3768575 |
aaagaaacaaccagcaaagagttttgttgcaaatgcttgtt |
3768615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 9e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 268 - 431
Target Start/End: Complemental strand, 3928724 - 3928561
Alignment:
| Q |
268 |
ttgagacaatccatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaacctaatgagaattaatagaaacgagaagatggaag |
367 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
3928724 |
ttgacacaatctatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaaccgaatgaaaattaatagaaacgagaagatggaag |
3928625 |
T |
|
| Q |
368 |
atagatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctctgtg |
431 |
Q |
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||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
3928624 |
atagatgaatgacatgaacggtaaattgaaggttctatggtagttaaattcctgaccctctgtg |
3928561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 3929073 - 3928981
Alignment:
| Q |
97 |
tgcaatttcttttcttgtttcaaatttgagtttccaaattctttggcaagactattttgttgggataatagttttatttttataatgtaccat |
189 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3929073 |
tgcaatttcttttcttgtttcaaatttgactttccaaattctttggcaaggctattttgttgggataatagttttatttttataatgtaccat |
3928981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 3929196 - 3929116
Alignment:
| Q |
1 |
ggatcaaatggtgaccattggatcaaatatttactatgatctctaacttttataaccacagcataatcttttcagcctttca |
82 |
Q |
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| T |
3929196 |
ggatcaaatggtgaccattggatcaa-tctttactatgatctctaacttttataaccacagcgtaatcttttcaccctttca |
3929116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 268 - 428
Target Start/End: Complemental strand, 6354074 - 6353914
Alignment:
| Q |
268 |
ttgagacaatccatgggaagaaggtatgaaacaagaggggttggtgttgttgtgatgacgatgaacctaatgagaattaatagaaacgagaagatggaag |
367 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
6354074 |
ttgacacaatccatgggaagaaggtatgaaacaagatgggttggtgttgttgtgatgacgatgaaccgaatgaaaattaatagaaacgagaagatggaag |
6353975 |
T |
|
| Q |
368 |
atagatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccctct |
428 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||| |
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| T |
6353974 |
atagatgaatggcatgaacggtaaattggaggttctatggtagtttaattcatgaccctct |
6353914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 94 - 269
Target Start/End: Complemental strand, 6354636 - 6354454
Alignment:
| Q |
94 |
tgctgcaatttcttttcttgtttcaaatttgagtttccaaattctttggcaagactattttgttgggataatagttttatttttataatgtaccat---- |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || |
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| T |
6354636 |
tgctgcaatttcttttcttgtttcaaatttgactttccaaattctttggcaagactattttgttgggataataattttatttttataatttataatgtac |
6354537 |
T |
|
| Q |
190 |
-atgattgtttgttgccactctttacacaat-cccactatc-aaagaaacaaccagcaaagagttttgttgcaaatgcttgtt |
269 |
Q |
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| T |
6354536 |
catgattgtttgttgccgctctttacacaatccccactatcaaaagaaacaaccagcaaagagttttgttgcaaatgcttgtt |
6354454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 6354759 - 6354668
Alignment:
| Q |
3 |
atcaaatggtgaccattggatcaaatatttactatgatctctaacttttataaccacagcataatcttttcagcctttcaattcatccctttg |
95 |
Q |
| |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||| |
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| T |
6354759 |
atcaaatggtgaccattggatcaa-tctttactatgatctctaacttttataaccacattgtaatattttcagcctttcgtttcatccctttg |
6354668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 342 - 426
Target Start/End: Original strand, 30372845 - 30372929
Alignment:
| Q |
342 |
aattaatagaaacgagaagatggaagatagatgaatggcatgaacggtaaattggaggttttatggtagttaaattcctgaccct |
426 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
30372845 |
aattaatagaaacgagaagatggaagatagatgaatgacatgaacggtaaattggaggatctatggtagttaaattcctgaccct |
30372929 |
T |
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