View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21406_low_12 (Length: 437)

Name: NF21406_low_12
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21406_low_12
NF21406_low_12
[»] chr3 (4 HSPs)
chr3 (12-365)||(30730782-30731148)
chr3 (345-391)||(29679423-29679469)
chr3 (345-391)||(29692943-29692989)
chr3 (345-391)||(29693357-29693403)
[»] chr1 (1 HSPs)
chr1 (346-391)||(3906941-3906986)
[»] chr7 (3 HSPs)
chr7 (358-389)||(19402940-19402971)
chr7 (358-389)||(19403355-19403386)
chr7 (346-386)||(44584518-44584558)
[»] chr2 (1 HSPs)
chr2 (349-391)||(27534482-27534524)
[»] scaffold0296 (1 HSPs)
scaffold0296 (346-386)||(986-1026)
[»] chr5 (1 HSPs)
chr5 (349-389)||(25471549-25471589)


Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 12 - 365
Target Start/End: Original strand, 30730782 - 30731148
Alignment:
Q  12 atgagaatggagcattttccaattcattcaactcaaatgaattattacattgtggaaggtaattatagtttaaacatctaactaattcagttagaactaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30730782 atgagaatggagcattttccaattcattcaactcaaatgaattattacattgtggaaggtaattatagtttaaacatctaactaattcagttagaactaa 30730881  T
Q  112 atccgtcttaagattattttgcacgggtctagtgtttaatttatgcttatgtaaattagtg-------------tttttagaaaaattatatgcactcta 198  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||             ||||||||||||||||||||||||||    
T  30730882 atccgtcttaagattattttgcacgggtctagtgtgtaatttatacttatgtaagttagtgtttttaataagtgtttttagaaaaattatatgcactcta 30730981  T
Q  199 tgaatggttgaaactaagaattatctaaataaaaattcttctagagatatgatgtcaacctctaatgtcataaatttcaaaaatcttctctatacactac 298  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30730982 tgaatggttgaaattaagaattatctaaataaaaattcttctaaagatatgatgtcaacctctaatgtcataaatttcaaaaatcttctctatacactac 30731081  T
Q  299 atttgaagttaccttaatatcttcacatgattaggcgaatgtcccgcttattaatagtcattgcaaa 365  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30731082 atttgaagttaccttaatatcttcacatgattaagcgaatgtcccgcttattaatagtcattgcaaa 30731148  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 29679423 - 29679469
Alignment:
Q  345 cttattaatagtcattgcaaatgaaacaactaaaggaaattgtcttc 391  Q
    |||||||||||||||||||||||| ||||| |||||||||| |||||    
T  29679423 cttattaatagtcattgcaaatgagacaaccaaaggaaattttcttc 29679469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 29692943 - 29692989
Alignment:
Q  345 cttattaatagtcattgcaaatgaaacaactaaaggaaattgtcttc 391  Q
    |||||||| ||||||||||||||| ||||| ||||||||||||||||    
T  29692943 cttattaacagtcattgcaaatgagacaaccaaaggaaattgtcttc 29692989  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 29693357 - 29693403
Alignment:
Q  345 cttattaatagtcattgcaaatgaaacaactaaaggaaattgtcttc 391  Q
    |||||||| ||||||||||||||| ||||| ||||||||||||||||    
T  29693357 cttattaacagtcattgcaaatgagacaaccaaaggaaattgtcttc 29693403  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 391
Target Start/End: Original strand, 3906941 - 3906986
Alignment:
Q  346 ttattaatagtcattgcaaatgaaacaactaaaggaaattgtcttc 391  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  3906941 ttattaatagtcattgcaaatgaaacaactaaatgaaattgtcttc 3906986  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 389
Target Start/End: Original strand, 19402940 - 19402971
Alignment:
Q  358 attgcaaatgaaacaactaaaggaaattgtct 389  Q
    ||||||||||||||||||||||||||||||||    
T  19402940 attgcaaatgaaacaactaaaggaaattgtct 19402971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 389
Target Start/End: Original strand, 19403355 - 19403386
Alignment:
Q  358 attgcaaatgaaacaactaaaggaaattgtct 389  Q
    ||||||||||||||||||||||||||||||||    
T  19403355 attgcaaatgaaacaactaaaggaaattgtct 19403386  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 44584558 - 44584518
Alignment:
Q  346 ttattaatagtcattgcaaatgaaacaactaaaggaaattg 386  Q
    |||||||||||||||||||||||||||   |||||||||||    
T  44584558 ttattaatagtcattgcaaatgaaacagtcaaaggaaattg 44584518  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 27534524 - 27534482
Alignment:
Q  349 ttaatagtcattgcaaatgaaacaactaaaggaaattgtcttc 391  Q
    ||||||||||||||||| |||||||| || |||||||||||||    
T  27534524 ttaatagtcattgcaaaagaaacaaccaatggaaattgtcttc 27534482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0296 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0296
Description:

Target: scaffold0296; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 986 - 1026
Alignment:
Q  346 ttattaatagtcattgcaaatgaaacaactaaaggaaattg 386  Q
    |||||||||||||||||||||||||||   |||||||||||    
T  986 ttattaatagtcattgcaaatgaaacagtcaaaggaaattg 1026  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 25471549 - 25471589
Alignment:
Q  349 ttaatagtcattgcaaatgaaacaactaaaggaaattgtct 389  Q
    ||||||||||||||||||||||||||||   ||||||||||    
T  25471549 ttaatagtcattgcaaatgaaacaactatcagaaattgtct 25471589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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