View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21406_low_2 (Length: 661)
Name: NF21406_low_2
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21406_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 8 - 392
Target Start/End: Original strand, 32724771 - 32725161
Alignment:
| Q |
8 |
tgagatgaaaaagcaacttaatttattattttgagtgttca-----tttcactagtgtatgttctatgtaatataggtctaggttttattgtatctagga |
102 |
Q |
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| T |
32724771 |
tgagatgaaaaagcaacttaatttattattttgagtgttcatttcatttcactagtgtatgttctatgtaatataggtctaggttttattgtatctagga |
32724870 |
T |
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| Q |
103 |
gcagctagtgaatttgtaacaattcaactaatgttgccagttttcaatctatttccatgttcaaattgatgagtattttttggacgtattactggtttat |
202 |
Q |
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| T |
32724871 |
gcagctgttgaatttgtaacaattgaactaatgttgccagttttcaatctatttccatgttcaaattgatgagtattttttgcacgtattactggtttat |
32724970 |
T |
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| Q |
203 |
gcggacagcatgattttcattagacacattgtcatttgttttgaggattgatacttcaaaatgctcttttattaaatgcccctattgtaattgcatagat |
302 |
Q |
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| T |
32724971 |
gcggacagcatgattttcattagacacattgtcatttgttttgaggattgatacttcaaaatgctcttttattaaatgcccctattgtaattgcatagtt |
32725070 |
T |
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| Q |
303 |
gttcc-nnnnnnnnnnngttatgaatttaaaggtactcacatttattttgttggtttatcccttttatagattgtagcagcaacaacggtt |
392 |
Q |
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| T |
32725071 |
gttccttttttttttttgttatgaatttaaaggtactcacatttattttgttggtttatcccttttatagattgtagcagcaacaacggtt |
32725161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 573 - 647
Target Start/End: Original strand, 32725843 - 32725917
Alignment:
| Q |
573 |
acttccaattctttggcttcatcaaacatacagatacaaacactttgagaatctaaaacctcttgctgctggcat |
647 |
Q |
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| T |
32725843 |
acttccaattctttggcttcatcaaacatacagatacaaacattttgagaatctaaaacctcttgctgctggcat |
32725917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 467 - 539
Target Start/End: Original strand, 32725721 - 32725793
Alignment:
| Q |
467 |
gaattcatgctccacaaaggcagtgacttaaaaagttaaatgatgagtactggcttataaaacaaatacttta |
539 |
Q |
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| T |
32725721 |
gaattcatgctccataaaggcagtgacttaaaaagttaaatgatgagtactggcttataaaacaaatacttta |
32725793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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