View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21406_low_20 (Length: 377)
Name: NF21406_low_20
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21406_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 9e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 173 - 358
Target Start/End: Original strand, 26881237 - 26881422
Alignment:
| Q |
173 |
cgtactgtacattagtgtactttgatatctaatgtgataaggcttaaagagctcnnnnnnncatcgtatacaaggagcccccttaaccatatatgcattg |
272 |
Q |
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| T |
26881237 |
cgtactgtacattagtgtacgttgatatctaatgtgataaggcttaaagagctcaaaaaaacatcgtatacaaggagcccccttaaccatatatgcattg |
26881336 |
T |
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| Q |
273 |
ggaatttggaccaattatcatgtgaatatttatcaaccttcaatttttagacaaggtcttcattgattcaaattagatatacgtac |
358 |
Q |
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| T |
26881337 |
ggaatttggaccaattatcatgtgaatatttatcaaccttcaatttttagacaaggtcttcattgattcaaattagatatacgtac |
26881422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 26881079 - 26881165
Alignment:
| Q |
16 |
atacatacatggtca-tagaataagacaagatttaacaggtaattgtgattaatgttagttaggtcgagttttaagtttttaacatg |
101 |
Q |
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| T |
26881079 |
atacatacatggtcaatagaataagacacgatttaacaggtaattgtgattgatgttagttaggtcgagttttaagtttttaacatg |
26881165 |
T |
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