View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21406_low_22 (Length: 364)
Name: NF21406_low_22
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21406_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 122 - 347
Target Start/End: Complemental strand, 1141467 - 1141241
Alignment:
| Q |
122 |
aaattattaatatgtgcatcaatcaaatcacactaaatagatatttttgacaatatttagaacaaagccta-ccaaaaataaaatgttatcataacgtga |
220 |
Q |
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| T |
1141467 |
aaattattaatatgtgcatcaatcaaatcacactaaatagatatttttgacaatatttagaacaaaacctaaccaaaaataaaatgttatcataacgtga |
1141368 |
T |
|
| Q |
221 |
tttgaatagatgttaaggtaaaaggttttaaactctaaacaagttaatcaatcatgcagttggcttttgaaaactctacacgtgctatctccatctagtc |
320 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1141367 |
tttgaatagatgttaaggtaaaaggttttacactctaaacaagttaatcaatcatgcagttggcttttgaaaactctacacgtgctatctccatctagtc |
1141268 |
T |
|
| Q |
321 |
catccctaacaagcagatagcaattgt |
347 |
Q |
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|||||||||| |||||||||||||||| |
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| T |
1141267 |
catccctaactagcagatagcaattgt |
1141241 |
T |
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