View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21406_low_23 (Length: 364)
Name: NF21406_low_23
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21406_low_23 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 171 - 364
Target Start/End: Original strand, 30730612 - 30730805
Alignment:
| Q |
171 |
atagacaaataataatgaaaaatgaaatgggtttgtatatacttggagtcaaggtcattgacctgtgaagaagtaaataatatattaaaaaactttgctg |
270 |
Q |
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| T |
30730612 |
atagacaaataataatgaaaaatgaaatgggtttgtatatacttggagtcaaggtcattgacctgtgaagaagtaaattatatattaaaaaactctgctg |
30730711 |
T |
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| Q |
271 |
aaaatgcatttaactcaaatgaaaactattgaaactattaacatcatgaacaatcggagagagaattctgatgagaatggagcattttccaatt |
364 |
Q |
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| T |
30730712 |
aaaatgcatttaactcaaatgaaaactattgaaactattaacatcatgaacaatcggagagagaattctgatgagaatggagcattttccaatt |
30730805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 141
Target Start/End: Original strand, 30730461 - 30730593
Alignment:
| Q |
10 |
catcatcataatcatgctaaaaggtatatttcgaagagataagtacagcgagttgtatatctaaacggcaagaaaaatgaaataaatatgcatggttg-n |
108 |
Q |
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| T |
30730461 |
catcatcataatcatgctaaaaggtatatttcgaagagataagtacagcgatttgtatatctaaacggcaagaaaaatgaaatcaatatgcatggttgaa |
30730560 |
T |
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| Q |
109 |
nnnnnnntagtataatgaaaagagaatatacaa |
141 |
Q |
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| T |
30730561 |
aaaaaaatagtataatgaaaagagaatatacaa |
30730593 |
T |
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