View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21406_low_26 (Length: 350)

Name: NF21406_low_26
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21406_low_26
NF21406_low_26
[»] chr7 (3 HSPs)
chr7 (19-336)||(32196207-32196524)
chr7 (94-182)||(7500917-7501005)
chr7 (183-243)||(7500838-7500898)
[»] chr1 (1 HSPs)
chr1 (70-182)||(43059679-43059791)
[»] chr8 (2 HSPs)
chr8 (94-182)||(10007314-10007402)
chr8 (183-243)||(10007421-10007481)
[»] chr3 (2 HSPs)
chr3 (94-182)||(47615122-47615210)
chr3 (183-243)||(47615229-47615289)
[»] chr6 (2 HSPs)
chr6 (109-179)||(7315865-7315935)
chr6 (183-243)||(7315957-7316017)
[»] chr5 (2 HSPs)
chr5 (94-182)||(18486449-18486537)
chr5 (183-243)||(18486556-18486616)


Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 32196207 - 32196524
Alignment:
Q  19 cccttgtcatctcgcataatcccttttcccttcctgtccaccacaggctcctcatcggaattctcctcatcctcgtcgtcttcgtcatcgtcgtcagtgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32196207 cccttgtcatctcgcataatcccttttcccttcctgtccaccacaggctcctcatcggaattctcctcatcctcgtcgtcttcgtcatcgtcgtcagtgt 32196306  T
Q  119 tgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtggtgggaagttcggattcttggtctacggtggtggtggaagttagcttggg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32196307 tgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtggtgggaagttcggtttcttggtctacggtggtggtggaagttagcttggg 32196406  T
Q  219 gtttttgttggggaggtgatgggtttcttcttgatcgggtttgcgtttggtggggaatgtgggttcttcgtggttgttggtttcgggttcagccatgagt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32196407 gtttttgttggggaggtgatgggtttcttcttgatcgggtttgcgtttggtggggaatgtgggttcttcgtggttgttggtttcgggttcagccatgagt 32196506  T
Q  319 gagggtttagcacaggtt 336  Q
    ||||||||||| ||||||    
T  32196507 gagggtttagcgcaggtt 32196524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 182
Target Start/End: Complemental strand, 7501005 - 7500917
Alignment:
Q  94 tcgtcttcgtcatcgtcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtggtgggaagttcgga 182  Q
    ||||| ||||| || ||||||||||  ||||||||||||||||||||| |||||||||||||  |||||||||||| ||||||||||||    
T  7501005 tcgtcctcgtcgtcttcgtcagtgtcattttcgggttcgttgttgggatcggcgtcggaagagcaattgacggtggagggaagttcgga 7500917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 7500898 - 7500838
Alignment:
Q  183 ttcttggtctacggtggtggtggaagttagcttggggtttttgttggggaggtgatgggtt 243  Q
    ||||||||||||||||||||  |  |||||||||||| |||||||||| ||||||||||||    
T  7500898 ttcttggtctacggtggtggcagttgttagcttgggggttttgttgggaaggtgatgggtt 7500838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 43059679 - 43059791
Alignment:
Q  70 tcatcggaattctcctcatcctcgtcgtcttcgtcatcgtcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtgg 169  Q
    |||||| |||||||||| || ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||  ||||||||||||    
T  43059679 tcatcgaaattctcctcgtcttcgtcctcttcgtcatcttcgtcagtgttattttcgggttcgttgttgggaacgacgtcggaagagcaattgacggtgg 43059778  T
Q  170 tgggaagttcgga 182  Q
     || |||||||||    
T  43059779 aggtaagttcgga 43059791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 182
Target Start/End: Original strand, 10007314 - 10007402
Alignment:
Q  94 tcgtcttcgtcatcgtcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtggtgggaagttcgga 182  Q
    ||||| ||||| || ||||| ||||  ||||||||||||||||||||| ||||||| |||||  |||||||||||| ||||||||||||    
T  10007314 tcgtcctcgtcgtcttcgtcggtgtcattttcgggttcgttgttgggatcggcgtcagaagagcaattgacggtggagggaagttcgga 10007402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 10007421 - 10007481
Alignment:
Q  183 ttcttggtctacggtggtggtggaagttagcttggggtttttgttggggaggtgatgggtt 243  Q
    ||||||||||||| |||| || |  |||||||||||| |||||||||| ||||||||||||    
T  10007421 ttcttggtctacgatggttgtagttgttagcttgggggttttgttgggaaggtgatgggtt 10007481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 182
Target Start/End: Original strand, 47615122 - 47615210
Alignment:
Q  94 tcgtcttcgtcatcgtcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtggtgggaagttcgga 182  Q
    ||||| ||||| || ||||||||||  ||||||||||||||||||||| ||||| || ||||  |||||||||||| ||||||||||||    
T  47615122 tcgtcctcgtcgtcttcgtcagtgtcattttcgggttcgttgttgggatcggcgacgaaagagcaattgacggtggagggaagttcgga 47615210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 47615229 - 47615289
Alignment:
Q  183 ttcttggtctacggtggtggtggaagttagcttggggtttttgttggggaggtgatgggtt 243  Q
    ||||||||||||||||||||  |  |||||||||||| |||||||||| ||||||||||||    
T  47615229 ttcttggtctacggtggtggcagttgttagcttgggggttttgttgggaaggtgatgggtt 47615289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 7315865 - 7315935
Alignment:
Q  109 tcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtggtgggaagttc 179  Q
    ||||||||||  ||||||||||||||||||||| ||| |||||||||  |||||||||||| |||||||||    
T  7315865 tcgtcagtgtcattttcgggttcgttgttgggatcggtgtcggaagagcaattgacggtggagggaagttc 7315935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 7315957 - 7316017
Alignment:
Q  183 ttcttggtctacggtggtggtggaagttagcttggggtttttgttggggaggtgatgggtt 243  Q
    ||||||||||||||||||||  |  |||| ||||||| |||| ||||| ||||||||||||    
T  7315957 ttcttggtctacggtggtggcagttgttaccttgggggtttttttgggaaggtgatgggtt 7316017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 182
Target Start/End: Original strand, 18486449 - 18486537
Alignment:
Q  94 tcgtcttcgtcatcgtcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtggtgggaagttcgga 182  Q
    ||||| ||||| || ||||||||||  |||||| |||||||||||||| ||||| || ||||  |||||||||||| ||||||||||||    
T  18486449 tcgtcctcgtcgtcttcgtcagtgtcattttcgagttcgttgttgggatcggcgacgaaagagcaattgacggtggagggaagttcgga 18486537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 18486556 - 18486616
Alignment:
Q  183 ttcttggtctacggtggtggtggaagttagcttggggtttttgttggggaggtgatgggtt 243  Q
    ||||||||||||||||||||  |  |||||||||||| |||||||||| ||||||||||||    
T  18486556 ttcttggtctacggtggtggcagttgttagcttgggggttttgttgggaaggtgatgggtt 18486616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University