View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21406_low_35 (Length: 259)
Name: NF21406_low_35
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21406_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 834721 - 834961
Alignment:
| Q |
9 |
ttcaatgctacggagcaggatgaaattgttaagtatatatacagattgcaaaggagaggacaacaaggaagacttagaggtatatacaaa-----gcttc |
103 |
Q |
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| T |
834721 |
ttcaatgctacggagcaggatgaaattgtcgagtatatatacggattgcaaaggagaggacaacaaggaagacttagaggtatatacaaattaaagcttc |
834820 |
T |
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| Q |
104 |
ttaatttctccttttattcttcaattcaatcacattccctttgatttatttgtcaactttagcatatactattattttgtttatcattatttcatatttg |
203 |
Q |
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| T |
834821 |
ttaatttctccttttattcttcaattcaatcacattccctttgatttatttgtcaactttagcatatac---tattttgtttatcattatttcatatttg |
834917 |
T |
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| Q |
204 |
taaccatgtttgttgcaccttcttagtgcacttatttgtatatt |
247 |
Q |
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| T |
834918 |
taaccatgtttgttgcaccttcttagtgcacctttttgtatatt |
834961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 813027 - 813244
Alignment:
| Q |
4 |
gtgtattcaatgctacggagcaggatgaaattgttaagtatatatacagattgcaaaggagaggacaacaaggaagacttagaggtatatacaaagcttc |
103 |
Q |
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| T |
813027 |
gtgtcttcaatgctacggagcagaatgaaattgttgactatatatacatattgcaacggagaggacaacaaggaagactgagaggtatatgcaaaacttc |
813126 |
T |
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| Q |
104 |
ttaatttctccttttattcttcaattcaatcacattccctttgatttatttgtcaactttagcatatactattattttgtttatcattatttcatatttg |
203 |
Q |
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| T |
813127 |
ctatcttctc--tttattcttcaattcaatcacaattcctttggtttatttgttaacttcaacatatac---ttttttgtttttcattagttcatatttg |
813221 |
T |
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| Q |
204 |
taaccatgtttgttgcaccttct |
226 |
Q |
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| T |
813222 |
tactcatgtttgttgcaccttct |
813244 |
T |
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