View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21406_low_36 (Length: 259)

Name: NF21406_low_36
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21406_low_36
NF21406_low_36
[»] chr4 (18 HSPs)
chr4 (16-244)||(3161737-3161964)
chr4 (16-244)||(30599648-30599873)
chr4 (19-215)||(52676473-52676669)
chr4 (39-212)||(3657673-3657844)
chr4 (16-244)||(38298438-38298663)
chr4 (82-244)||(37978019-37978179)
chr4 (16-191)||(40982772-40982946)
chr4 (24-244)||(43968374-43968589)
chr4 (110-244)||(6077647-6077780)
chr4 (82-192)||(25231769-25231875)
chr4 (16-64)||(36219156-36219204)
chr4 (176-244)||(32212852-32212919)
chr4 (155-215)||(51997110-51997170)
chr4 (16-64)||(6076680-6076728)
chr4 (4-60)||(29627909-29627965)
chr4 (16-64)||(51997281-51997329)
chr4 (17-58)||(22425013-22425054)
chr4 (16-60)||(26417274-26417318)
[»] chr2 (9 HSPs)
chr2 (16-244)||(44277579-44277807)
chr2 (16-244)||(9707269-9707495)
chr2 (16-244)||(5552353-5552578)
chr2 (152-244)||(12392143-12392235)
chr2 (178-244)||(11512085-11512151)
chr2 (18-64)||(20683426-20683472)
chr2 (17-66)||(11916011-11916060)
chr2 (16-64)||(11511915-11511963)
chr2 (18-69)||(9973817-9973868)
[»] chr3 (14 HSPs)
chr3 (40-244)||(31153403-31153605)
chr3 (16-193)||(7932329-7932505)
chr3 (16-244)||(39994433-39994648)
chr3 (82-244)||(3432795-3432954)
chr3 (16-143)||(42004261-42004388)
chr3 (82-143)||(52315292-52315353)
chr3 (152-244)||(49615646-49615737)
chr3 (18-244)||(42760595-42760823)
chr3 (16-244)||(28963568-28963801)
chr3 (80-239)||(51305756-51305914)
chr3 (18-66)||(52669785-52669833)
chr3 (19-64)||(45707716-45707761)
chr3 (16-48)||(38138223-38138255)
chr3 (16-48)||(50596198-50596230)
[»] chr5 (21 HSPs)
chr5 (16-142)||(15635249-15635375)
chr5 (16-244)||(9784586-9784814)
chr5 (16-208)||(14089755-14089945)
chr5 (16-143)||(606420-606547)
chr5 (16-244)||(13542212-13542432)
chr5 (152-244)||(15635725-15635818)
chr5 (17-132)||(32273633-32273748)
chr5 (82-244)||(19495068-19495226)
chr5 (16-143)||(15072127-15072254)
chr5 (180-244)||(8433897-8433961)
chr5 (177-244)||(28837884-28837951)
chr5 (82-143)||(16176246-16176306)
chr5 (17-66)||(37194327-37194376)
chr5 (17-66)||(39324069-39324118)
chr5 (155-215)||(32273748-32273807)
chr5 (19-66)||(33207495-33207542)
chr5 (16-62)||(10933561-10933607)
chr5 (16-58)||(19495002-19495044)
chr5 (17-67)||(33494724-33494774)
chr5 (196-244)||(606581-606629)
chr5 (16-64)||(13417254-13417302)
[»] chr8 (16 HSPs)
chr8 (16-244)||(40678865-40679089)
chr8 (82-244)||(8644309-8644469)
chr8 (86-244)||(67566-67718)
chr8 (152-244)||(31511449-31511540)
chr8 (16-244)||(7206881-7207104)
chr8 (17-66)||(38901227-38901276)
chr8 (16-64)||(31511365-31511413)
chr8 (17-66)||(17793343-17793392)
chr8 (16-60)||(10288115-10288159)
chr8 (16-64)||(26705769-26705817)
chr8 (17-64)||(7176692-7176739)
chr8 (173-244)||(7176835-7176905)
chr8 (82-138)||(6107431-6107487)
chr8 (16-64)||(29416689-29416737)
chr8 (16-60)||(40228992-40229036)
chr8 (152-212)||(40229714-40229773)
[»] chr1 (21 HSPs)
chr1 (16-244)||(33726895-33727123)
chr1 (16-211)||(32827188-32827384)
chr1 (101-244)||(35616840-35616980)
chr1 (152-244)||(48722022-48722112)
chr1 (80-143)||(46592292-46592355)
chr1 (173-244)||(32913750-32913821)
chr1 (17-66)||(31636542-31636591)
chr1 (18-66)||(4448041-4448089)
chr1 (17-64)||(44573872-44573919)
chr1 (17-66)||(14884679-14884728)
chr1 (17-66)||(42401078-42401127)
chr1 (17-64)||(32913938-32913985)
chr1 (178-217)||(42400928-42400967)
chr1 (17-59)||(33259432-33259474)
chr1 (17-59)||(33279591-33279633)
chr1 (17-66)||(14395977-14396026)
chr1 (17-62)||(15457039-15457084)
chr1 (16-60)||(1774982-1775026)
chr1 (16-60)||(3582787-3582831)
chr1 (155-211)||(15457223-15457279)
chr1 (16-48)||(51244082-51244114)
[»] chr7 (11 HSPs)
chr7 (16-244)||(34967813-34968038)
chr7 (16-231)||(17000550-17000762)
chr7 (16-143)||(5355888-5356014)
chr7 (23-143)||(30833632-30833752)
chr7 (16-65)||(30224766-30224815)
chr7 (179-244)||(30833802-30833867)
chr7 (16-64)||(33882130-33882178)
chr7 (16-64)||(37503961-37504009)
chr7 (178-244)||(958164-958229)
chr7 (17-66)||(27816524-27816573)
chr7 (16-60)||(958004-958048)
[»] chr6 (6 HSPs)
chr6 (82-244)||(32025733-32025893)
chr6 (17-66)||(378643-378692)
chr6 (18-62)||(6793900-6793944)
chr6 (19-64)||(4405691-4405736)
chr6 (17-66)||(11703167-11703216)
chr6 (179-244)||(29383794-29383859)
[»] scaffold1114 (1 HSPs)
scaffold1114 (20-66)||(2377-2423)
[»] scaffold0110 (1 HSPs)
scaffold0110 (17-66)||(26734-26783)


Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 3161737 - 3161964
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    ||||||||||||| ||||||||||||||||||||||||||||||  ||||||| ||        | ||||| ||||||| |||||||| ||  |||||||    
T  3161737 tattttttaataacagtacctaataggtactcattcactccaataaagaccttctgacaaaaagtctaaataggtcccataactaacttttcatcattta 3161836  T
Q  116 cattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagacccccaa 215  Q
    ||||||||||||||||||||||||||||         |||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||    
T  3161837 cattccaccactaacatattattttaataaaaaaaaatgtgtggggaccactaaaagatgggggtcttaagttagaccatgcgtcttagaagacccccaa 3161936  T
Q  216 gattttttcccacaatgggagtacctatt 244  Q
     ||||||||||||||||||||||| ||||    
T  3161937 -attttttcccacaatgggagtacatatt 3161964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 30599873 - 30599648
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||       | |||||| |||||||| ||| ||||| |||||||     
T  30599873 tattttttaataacagtacctaaaaggtactcattcactccaatggagaccttatggcaaaaagtctaaatgagtcccacaccta-ctcttcctcatttg 30599775  T
Q  116 cattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagacccccaa 215  Q
    ||||||||||||||||||||||||||||        ||||||||||||||||||||||||| |||||||||||||||| ||| ||||| |||||||| ||    
T  30599774 cattccaccactaacatattattttaataaaaaaa-gtgtgtggggaccactaaaagatgg-ggtcttaagttagaccctggatcttaaaagaccccaaa 30599677  T
Q  216 gattttttcccacaatgggagtacctatt 244  Q
       |||| | |||||||| ||||||||||    
T  30599676 agattttccgcacaatggaagtacctatt 30599648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 52676473 - 52676669
Alignment:
Q  19 tttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcatttacat 118  Q
    |||||||||| ||||||||||| | ||| |||||||||||| ||||| || |||       | ||||||| ||| |||||||||||||  ||||||||||    
T  52676473 tttttaataacagtacctaataagaacttattcactccaatagagacattctggcaaaaagtctaaatggatccgacaactaactcttcttcatttacat 52676572  T
Q  119 tccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagacccccaa 215  Q
    ||||||||||| |||||||||||||        ||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||    
T  52676573 tccaccactaatatattattttaataaaaaaaagtgtgtggggaccactaaaagatgggggtcttaagttagaccctgggtcttataagacccccaa 52676669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 212
Target Start/End: Complemental strand, 3657844 - 3657673
Alignment:
Q  39 taggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcatttacattccaccactaacatattatt 138  Q
    |||||||||||||||||||||||| ||||| |         | |||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||    
T  3657844 taggtactcattcactccaatggaaaccttctaacaaaaagtctaaatgggtcccacaactaactcttcatcatttatattccaccactaacatattatt 3657745  T
Q  139 ttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagacccc 212  Q
    |||||        || ||||||||||| |||||||| |||||||||||||||| | ||||||||||||||||||    
T  3657744 ttaat-aaaaattgtatgtggggaccattaaaagat-gaggtcttaagttagatcatgggtcttagaagacccc 3657673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 38298663 - 38298438
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    ||||||||||||| |||||||||||||||||||| |||||||| ||||| ||| |||       | ||||| ||| ||| | |||||| || ||| ||||    
T  38298663 tattttttaataacagtacctaataggtactcatccactccaaaggagatcttatggcaaaaagtctaaataggttccatagctaactattcctcgttta 38298564  T
Q  116 cattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagacccccaa 215  Q
    |||||||||||||||||  |||||||||        |||||||||||||||||||| ||   ||||||||||||| |  ||| |||||||||||||||||    
T  38298563 cattccaccactaacat--tattttaataaaaaaa-gtgtgtggggaccactaaaaaataagggtcttaagttaggcactggatcttagaagacccccaa 38298467  T
Q  216 gattttttcccacaatgggagtacctatt 244  Q
      |||||||||||||| | | ||||||||    
T  38298466 ttttttttcccacaatagaaatacctatt 38298438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 244
Target Start/End: Original strand, 37978019 - 37978179
Alignment:
Q  82 taaatgggtcccacaactaactctttctcatttacattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtc 181  Q
    |||||||||||||  | ||||||||  ||||||| |||||||||||||||||||||||||||        ||||||||| |||||| |||||| ||||      
T  37978019 taaatgggtcccatcaataactcttaatcatttaaattccaccactaacatattattttaat-aaaaaaagtgtgtgggaaccacttaaagat-gagggt 37978116  T
Q  182 ttaagttagaccttgggtcttagaagacccccaagattttttcccacaatgggagtacctatt 244  Q
    ||||||||||||    ||||||||||||| |||| |  |||||||||||||| ||||||||||    
T  37978117 ttaagttagaccccaagtcttagaagacctccaaaaaattttcccacaatggaagtacctatt 37978179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 40982946 - 40982772
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    |||||| |||||| ||||| ||||||||||||| ||||| ||||||||| |||||         | ||||||||| |||  ||||||||||  |||||||    
T  40982946 tattttataataacagtacttaataggtactcagtcactgcaatggagatcttttaacaaaaagtctaaatgggttccatcactaactcttaatcattta 40982847  T
Q  116 cattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttaga 191  Q
     ||| |||||||||||||||||||||||        |||||||||||||||| |||||||  ||||||||||||||    
T  40982846 aatttcaccactaacatattattttaat-aaaaaaagtgtgtggggaccacttaaagatgtgggtcttaagttaga 40982772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 244
Target Start/End: Original strand, 43968374 - 43968589
Alignment:
Q  24 aataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcatttacattccac 123  Q
    ||||| ||||||||||||||||||  ||||||||||||||| ||| |         | ||||||| |||||| ||||||||||  ||||||  |||||||    
T  43968374 aataacagtacctaataggtactcggtcactccaatggagatcttctaacaaaaagtctaaatggatcccaccactaactcttaatcatttgaattccac 43968473  T
Q  124 cactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttaga--ccttgggtcttagaagaccccc-aagattt 220  Q
    ||||||||||||||||||||        |||||||||||||||| ||||||    |||||||||||||  ||||   ||||||||||||||| || |       
T  43968474 cactaacatattattttaat-aaaaaaagtgtgtggggaccacttaaagat----gtcttaagttagacccctt---tcttagaagacccccaaaaaaaa 43968565  T
Q  221 tttcccacaatgggagtacctatt 244  Q
    ||||||| ||||||||||||||||    
T  43968566 tttcccataatgggagtacctatt 43968589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 244
Target Start/End: Original strand, 6077647 - 6077780
Alignment:
Q  110 catttacattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagac 209  Q
    |||||| ||||||||| |||||||||||||||||        |||||||||||| | | |||||||| ||| |||||||||||||   ||||||||||||    
T  6077647 catttaaattccaccaataacatattattttaataaaaaaa-gtgtgtggggactaattaaagatgggggttttaagttagacctcaagtcttagaagac 6077745  T
Q  210 ccccaagattttttcccacaatgggagtacctatt 244  Q
    |||||| |   ||| ||||||||| ||||||||||    
T  6077746 ccccaaaaaaattttccacaatggaagtacctatt 6077780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 25231769 - 25231875
Alignment:
Q  82 taaatgggtcccacaactaactctttctcatttacattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtc 181  Q
    |||||||||| ||| ||||||||||  ||||||| ||| |||||||||||||||||||||||        |||||||||||||||| |||||||| ||||    
T  25231769 taaatgggtctcaccactaactcttaatcattta-attacaccactaacatattattttaat--aaaaaagtgtgtggggaccacttaaagatgg-ggtc 25231864  T
Q  182 ttaagttagac 192  Q
    |||||||||||    
T  25231865 ttaagttagac 25231875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 36219204 - 36219156
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggaga 64  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  36219204 tattttttaataatagtacctaataggtactcaatcactccaatggaga 36219156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 32212852 - 32212919
Alignment:
Q  176 gaggtcttaagttagaccttgggtcttagaagacccccaagattttttcccacaatgggagtacctatt 244  Q
    |||||||||||| ||||| |||||||||  ||||||||||| |||||| | ||||||||||||||||||    
T  32212852 gaggtcttaagtgagaccctgggtcttaagagacccccaag-tttttttctacaatgggagtacctatt 32212919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 51997170 - 51997110
Alignment:
Q  155 tgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagacccccaa 215  Q
    ||||||| ||||| ||  || |||||||||||| |||||||||||||||||||||||||||    
T  51997170 tgtggggcccacttaagcattgaggtcttaagtgagaccttgggtcttagaagacccccaa 51997110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 6076680 - 6076728
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggaga 64  Q
    |||||| |||||| ||||||||||||||||||| |||||||||| ||||    
T  6076680 tattttataataatagtacctaataggtactcagtcactccaatagaga 6076728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 29627909 - 29627965
Alignment:
Q  4 tgcaattaagcctattttttaataagagtacctaataggtactcattcactccaatg 60  Q
    ||||| ||||||||||||||||| | |||| ||||||||||||||  ||||||||||    
T  29627909 tgcaactaagcctattttttaatcatagtatctaataggtactcaaccactccaatg 29627965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 51997329 - 51997281
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggaga 64  Q
    ||||||||||||| |||||||||||||||||||  |||| |||||||||    
T  51997329 tattttttaataatagtacctaataggtactcaaccactacaatggaga 51997281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 22425013 - 22425054
Alignment:
Q  17 attttttaataagagtacctaataggtactcattcactccaa 58  Q
    |||||||||||| |||||||||||||||||||  ||||||||    
T  22425013 attttttaataatagtacctaataggtactcaaccactccaa 22425054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 26417318 - 26417274
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatg 60  Q
    |||||||||||||  ||||||||||||||||||  ||||||||||    
T  26417318 tattttttaataatggtacctaataggtactcaaccactccaatg 26417274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 44277807 - 44277579
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    ||||||||||||  ||||||||||||||||||||||||||||||| ||| ||| | |       | |||||||||||||||||||||||||  |||||||    
T  44277807 tattttttaatagcagtacctaataggtactcattcactccaatgaagaacttcttgtaaaaagtctaaatgggtcccacaactaactcttcttcattta 44277708  T
Q  116 cattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagacccccaa 215  Q
    ||||||||||| ||||||||||||||||        |||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||  ||    
T  44277707 cattccaccaccaacatattattttaataaaaaaaagtgtgttgggaccactaaaagatgggggtcttaacttagaccttgggtcttagaagaccctaaa 44277608  T
Q  216 gattttttcccacaatgggagtacctatt 244  Q
      ||||| ||||||||| |||||||||||    
T  44277607 tttttttccccacaatgagagtacctatt 44277579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 9707269 - 9707495
Alignment:
Q  16 tattttttaataagagtacctaat-aggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattt 114  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||| | ||| ||        | |||||||||||||||||||||||||  ||||||    
T  9707269 tattttttaataacagtacctaattaggtactcattcactccaatggaaatcttctgacaaaaattctaaatgggtcccacaactaactcttcatcattt 9707368  T
Q  115 acattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagaccccca 214  Q
    |||||||||||||||||| ||||||||||        |||||||||||||||| |||||||| |||||||||||||||| ||| ||||||||||||||||    
T  9707369 acattccaccactaacatgttattttaattaaaaa--gtgtgtggggaccactgaaagatgggggtcttaagttagaccctggatcttagaagaccccca 9707466  T
Q  215 agattttttcccacaatgggagtacctatt 244  Q
    | |||||  |||||||||||||||||||||    
T  9707467 a-attttcccccacaatgggagtacctatt 9707495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 5552353 - 5552578
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    |||||| |||||| ||||||||||||||||||  ||||||||||||||| ||| |         | |||||| ||||||| ||||||||||  |||||||    
T  5552353 tattttataataaaagtacctaataggtactcggtcactccaatggagatcttctaacaaaaagtctaaatgtgtcccaccactaactcttattcattta 5552452  T
Q  116 cattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagacccccaa 215  Q
     ||| || ||||||||||||||||||||        |||||||||||| ||| |||||||| ||||||||||||||||    ||||||||||| ||||||    
T  5552453 aatttcagcactaacatattattttaataaaaat--gtgtgtggggactacttaaagatgggggtcttaagttagaccccatgtcttagaaga-ccccaa 5552549  T
Q  216 gattttttcccacaatgggagtacctatt 244  Q
      ||| |||||||||||||||||||||||    
T  5552550 attttattcccacaatgggagtacctatt 5552578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 244
Target Start/End: Original strand, 12392143 - 12392235
Alignment:
Q  152 gtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagacccccaagattttttcccacaatgggagtacctatt 244  Q
    ||||||||||||||||||||||||| ||| |||||||||||  |  |||||||||||| |||||  ||||| |||||||| ||||||||||||    
T  12392143 gtgtgtggggaccactaaaagatgggggttttaagttagacactaagtcttagaagactcccaaattttttccccacaataggagtacctatt 12392235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 11512085 - 11512151
Alignment:
Q  178 ggtcttaagttagaccttgggtcttagaagacccccaagattttttcccacaatgggagtacctatt 244  Q
    |||||||||||||||| |||||||||  |||||||||| ||||||| ||||| |||| |||||||||    
T  11512085 ggtcttaagttagaccctgggtcttaagagacccccaaaatttttttccacattgggggtacctatt 11512151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 20683472 - 20683426
Alignment:
Q  18 ttttttaataagagtacctaataggtactcattcactccaatggaga 64  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||    
T  20683472 ttttttaataatagtacctaataggtactcaatcactccaatggaga 20683426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 11916060 - 11916011
Alignment:
Q  17 attttttaataagagtacctaataggtactcattcactccaatggagacc 66  Q
    |||||||||||| |||||||||||||||||||  ||||||||||||||||    
T  11916060 attttttaataatagtacctaataggtactcaaccactccaatggagacc 11916011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 11511915 - 11511963
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggaga 64  Q
    ||||||||||||| |||||||||||||||||||  ||||||||| ||||    
T  11511915 tattttttaataatagtacctaataggtactcaaccactccaatagaga 11511963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 9973817 - 9973868
Alignment:
Q  18 ttttttaataagagtacctaataggtactcattcactccaatggagaccttt 69  Q
    ||||||||||| |||||||||||||||| ||  ||||||||| |||||||||    
T  9973817 ttttttaataacagtacctaataggtacccaaccactccaatagagaccttt 9973868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 40 - 244
Target Start/End: Original strand, 31153403 - 31153605
Alignment:
Q  40 aggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcatttacattccaccactaacatattattt 139  Q
    |||||||||||||||||||| |||||||| |||         |||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||    
T  31153403 aggtactcattcactccaatagagaccttatggcaaaaagcctaaatgggtcacacaactaactcttcatcatttacattccaccactaacatattattt 31153502  T
Q  140 taatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagacccccaagattttttcccacaatgggagtac 239  Q
    ||||        ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||    
T  31153503 taataaaaaaa-gtgtgtggggaccactaaaagatgg-ggtcttaagttagaccctgggtcttagaagacccccaaatttttttcccacaatgggagtac 31153600  T
Q  240 ctatt 244  Q
    |||||    
T  31153601 ctatt 31153605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 7932329 - 7932505
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    |||||||||||||||||| ||||||  |||| ||||||| ||||||||||||| |||       | ||||||||| ||||||||||||||| || |||||    
T  7932329 tattttttaataagagtatctaatatatacttattcacttcaatggagaccttatggcaaaaagtctaaatgggttccacaactaactcttccttattta 7932428  T
Q  116 cattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttagacc 193  Q
    |||||||||||||| |||||||||||||        ||||||||  ||||||||||||||| |||||||| |||||||    
T  7932429 cattccaccactaatatattattttaat-aaaaaaagtgtgtggaaaccactaaaagatgggggtcttaaattagacc 7932505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 39994648 - 39994433
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    ||||||||||||| |||| |||||| |||||||||||||||||||||||  || | |       | ||||||| ||||||||||||||||| ||||||||    
T  39994648 tattttttaataacagtatctaataagtactcattcactccaatggagattttatagcaaaaactctaaatggatcccacaactaactcttcctcattta 39994549  T
Q  116 cattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagacccccaa 215  Q
    |||| || ||||||||||||||| ||||        ||||||||||||||||||||||||          |||||||||| ||||||||||||| |||||    
T  39994548 catttcatcactaacatattattataataaaaaaaagtgtgtggggaccactaaaagatg----------gttagacctt-ggtcttagaagactcccaa 39994460  T
Q  216 gattttttcccacaatgggagtacctatt 244  Q
     |||||| |||||||| ||||||||||||    
T  39994459 -atttttccccacaat-ggagtacctatt 39994433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 82 - 244
Target Start/End: Complemental strand, 3432954 - 3432795
Alignment:
Q  82 taaatgggtcccacaactaactctttctcatttacattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtc 181  Q
    ||||| |||| ||| ||||||||||  ||| ||| |||||||||||||||||||||||||||        |||||||||||||||| |||||||| ||||    
T  3432954 taaataggtcacaccactaactcttaatcaattaaattccaccactaacatattattttaataaaaaa--gtgtgtggggaccacttaaagatgg-ggtc 3432858  T
Q  182 ttaagttagaccttgggtcttagaagacccccaagattttttcccacaatgggagtacctatt 244  Q
    ||||||||||||    ||||||||||||||||||  ||||| |||||||||| ||||||||||    
T  3432857 ttaagttagaccccatgtcttagaagacccccaaattttttccccacaatggaagtacctatt 3432795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 42004388 - 42004261
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    ||||||||||||| | |  |||||| |||||||||||||||||||||||| ||  ||       | ||||||| ||| | ||||||||||| || |||||    
T  42004388 tattttttaataacaatttctaataagtactcattcactccaatggagacattccggcaaaaagtctaaatggatccaataactaactcttcctaattta 42004289  T
Q  116 cattccaccactaacatattattttaat 143  Q
    |||||||||| |||||||||||||||||    
T  42004288 cattccaccattaacatattattttaat 42004261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 52315353 - 52315292
Alignment:
Q  82 taaatgggtcccacaactaactctttctcatttacattccaccactaacatattattttaat 143  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||    
T  52315353 taaatgggtcccacaactaactcttcctcatttacattccatcaccaacgtattattttaat 52315292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 244
Target Start/End: Complemental strand, 49615737 - 49615646
Alignment:
Q  152 gtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagacccccaagattttttcccacaatgggagtacctatt 244  Q
    |||||||||||||||| ||||||||| |||||||||||||||    |||||||||||| ||||| | ||||| ||||||||| ||||||||||    
T  49615737 gtgtgtggggaccacttaaagatggaagtcttaagttagaccccatgtcttagaagacacccaa-acttttttccacaatggaagtacctatt 49615646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 42760595 - 42760823
Alignment:
Q  18 ttttttaataagagtacctaataggta----ctcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcatt 113  Q
    ||||||||||| |||||||||||||||    |||||||| |||||||||||| ||  |        | || |||||| |||||||||||||||  |||||    
T  42760595 ttttttaataacagtacctaataggtaggtactcattcaatccaatggagacattcagacaaaaagtctatatgggttccacaactaactcttcatcatt 42760694  T
Q  114 tacattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagaccccc 213  Q
    | |||| ||| ||||| |||||||||||||        |||||||| |||||||||||||||  |||||||| ||||||| | ||||||| || || | |    
T  42760695 tccatttcactactaatatattattttaataaaaaaa-gtgtgtggagaccactaaaagatgagggtcttaaattagaccctaggtcttaaaaaactctc 42760793  T
Q  214 aagattttttcccacaatgggagtacctatt 244  Q
    || ||||||  |||||||||||| |||||||    
T  42760794 aa-atttttctccacaatgggagcacctatt 42760823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 28963801 - 28963568
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    |||||| ||||||  |||||||||||||||||| ||||||||||||||| ||| |         | |||||| |||| ||  |||||||||  |||||||    
T  28963801 tattttataataacggtacctaataggtactcagtcactccaatggagatcttctaacaaatagtctaaatgagtcctaccgctaactcttaatcattta 28963702  T
Q  116 cattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggagg--------tcttaagttagaccttgggtcttagaag 207  Q
     |||||||||||||||||||||||||||        |||| ||||||||||| ||| |||| ||        |||||| |||||||    ||||||||||    
T  28963701 aattccaccactaacatattattttaataaaaaa--gtgtatggggaccacttaaa-atggggggtctaaactcttaaattagaccccatgtcttagaag 28963605  T
Q  208 acccccaagattttttcccacaatgggagtacctatt 244  Q
    | ||||||  |||||||||||||||||||||||||||    
T  28963604 agccccaaatttttttcccacaatgggagtacctatt 28963568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 239
Target Start/End: Complemental strand, 51305914 - 51305756
Alignment:
Q  80 tttaaatgggtcccacaactaactctttctcatttacattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatgga-g 178  Q
    |||||||| || |||| ||||||| ||  ||||||| ||| |||||||||||||||||||||||        ||||||||||| |||| ||||||||| |    
T  51305914 tttaaatgagttccactactaacttttaatcatttaaatttcaccactaacatattattttaat--aaaaaagtgtgtggggatcacttaaagatggagg 51305817  T
Q  179 gtcttaagttagaccttgggtcttagaagacccccaagattttttcccacaatgggagtac 239  Q
    |||||||||||||||    |||||| |||| |||||| |    ||||||||||||||||||    
T  51305816 gtcttaagttagaccccaagtcttacaagatccccaaaaaaaattcccacaatgggagtac 51305756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 52669833 - 52669785
Alignment:
Q  18 ttttttaataagagtacctaataggtactcattcactccaatggagacc 66  Q
    ||||||||||| |||| ||||||||||||||  ||||||||||||||||    
T  52669833 ttttttaataatagtatctaataggtactcaaccactccaatggagacc 52669785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 45707761 - 45707716
Alignment:
Q  19 tttttaataagagtacctaataggtactcattcactccaatggaga 64  Q
    |||||||||| |||||||||||||||||||  ||||||||| ||||    
T  45707761 tttttaataatagtacctaataggtactcaaccactccaatagaga 45707716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 38138223 - 38138255
Alignment:
Q  16 tattttttaataagagtacctaataggtactca 48  Q
    ||||||||||||| |||||||||||||||||||    
T  38138223 tattttttaataatagtacctaataggtactca 38138255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 50596230 - 50596198
Alignment:
Q  16 tattttttaataagagtacctaataggtactca 48  Q
    ||||||||||||| |||||||||||||||||||    
T  50596230 tattttttaataatagtacctaataggtactca 50596198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 15635249 - 15635375
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  15635249 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggcaaaaagtttaaatgggtcccacaactaactctttctcattta 15635348  T
Q  116 cattccaccactaacatattattttaa 142  Q
    |||||||||||||||||||||||||||    
T  15635349 cattccaccactaacatattattttaa 15635375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 9784586 - 9784814
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    ||||||||||||| | ||| |||||||||||||||||||||| | |||||||| |||       | |||||  |||| ||||||||||||| ||| ||||    
T  9784586 tattttttaataacaatacttaataggtactcattcactccactagagaccttctggcaaaaagtctaaatatgtcctacaactaactcttcctcgttta 9784685  T
Q  116 cattccaccactaacatattattttaatnnnnnnnngtgtgtggg-gaccactaaaagatggaggtcttaagttagaccttgggtcttagaagaccccca 214  Q
    ||||||||||||||||||||||||||||        ||||||||| || ||||||||||||||| ||||||||||||||||| ||||||||||| |||||    
T  9784686 cattccaccactaacatattattttaataaaaaaaagtgtgtgggagatcactaaaagatggag-tcttaagttagaccttgagtcttagaagatcccca 9784784  T
Q  215 agattttttcccacaatgggagtacctatt 244  Q
    |  |||  ||||||||||||||||||||||    
T  9784785 aattttcctcccacaatgggagtacctatt 9784814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 14089755 - 14089945
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    ||||||||||||| | || |||||||||||||||||||| ||||  ||||||||| |       | ||||| ||| ||||||||||||||| ||||||||    
T  14089755 tattttttaataacaatatctaataggtactcattcacttcaatatagaccttttagcaaaaagtataaataggttccacaactaactcttcctcattta 14089854  T
Q  116 cattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaaga 208  Q
    ||||||||||||||||||||||||||||         |||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||    
T  14089855 cattccaccactaacatattattttaataaaaaaaa-tgtgtggggaccactaaaagatgg-ggtcttaagttagaccatggatcttagaaga 14089945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 606420 - 606547
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    |||||||||| || ||||||||||||||||||||||||||||||| |||| ||||||       | ||||||||||||||||||||||||| ||||| ||    
T  606420 tattttttaacaacagtacctaataggtactcattcactccaatgtagacattttggcaaaaaatctaaatgggtcccacaactaactcttcctcatcta 606519  T
Q  116 cattccaccactaacatattattttaat 143  Q
    ||||||||||||||||||||||||||||    
T  606520 cattccaccactaacatattattttaat 606547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 13542212 - 13542432
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    |||||| |||||||||||||||| ||||||| || ||||||||| || ||||| ||        | ||||||||||| ||||||||||||| |||||||     
T  13542212 tattttgtaataagagtacctaacaggtacttatccactccaatagataccttatgacaaaaagtctaaatgggtcctacaactaactcttcctcatttg 13542311  T
Q  116 cattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagacccccaa 215  Q
    |||||||||||||||    |||||||           | |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  13542312 cattccaccactaactc--tatttta----taaaaaatatgtggggaccactaaaagatgggggtcttaagttagacc-tgggtcttagaagacccccaa 13542404  T
Q  216 gattttttcccacaatgggagtacctatt 244  Q
      |||||||||||||||||||||||||||    
T  13542405 -tttttttcccacaatgggagtacctatt 13542432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 152 - 244
Target Start/End: Original strand, 15635725 - 15635818
Alignment:
Q  152 gtgtgtggggaccactaaa-agatggaggtcttaagttagaccttgggtcttagaagacccccaagattttttcccacaatgggagtacctatt 244  Q
    ||||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||||| | |||||||| |||||||||||||||||||||    
T  15635725 gtgtgtggggaccactaaacacatggaggtcttaagttagaccctaggtcttagaagacccacgagatttttccccacaatgggagtacctatt 15635818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 32273633 - 32273748
Alignment:
Q  17 attttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcatttac 116  Q
    ||||||||||||  ||| |||||| |||||||||||||| |||||||| ||| |||       |||||||||||||||||||||||||||  ||||||||    
T  32273633 attttttaataacggtatctaataagtactcattcactctaatggagatcttctggcaaaaagtttaaatgggtcccacaactaactcttcatcatttac 32273732  T
Q  117 attccaccactaacat 132  Q
    ||||||||||||||||    
T  32273733 attccaccactaacat 32273748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 82 - 244
Target Start/End: Original strand, 19495068 - 19495226
Alignment:
Q  82 taaatgggtcccacaactaactctttctcatttacattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtc 181  Q
    |||||||||||||  || |||||||  ||||||| |||||||||||||||||||||||||||        |||||||||||||||| |||||| | ||||    
T  19495068 taaatgggtcccatcaccaactcttaatcatttaaattccaccactaacatattattttaat--aaaaaagtgtgtggggaccacttaaagatag-ggtc 19495164  T
Q  182 ttaagttagaccttgggtcttagaagacccccaagattttttcccacaatgggagtacctatt 244  Q
    ||||||||||||    || |||||||||| |||| |||||| |||| ||||||||||||||||    
T  19495165 ttaagttagaccccaagtattagaagacctccaa-atttttccccataatgggagtacctatt 19495226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 15072127 - 15072254
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    |||||| |||||| ||||||||||||||||||  |||||| |||||||| ||| |         | |||||| ||||||| ||||||||||  |||||||    
T  15072127 tattttataataacagtacctaataggtactcggtcactctaatggagatcttctaacaaaaagtctaaatgagtcccaccactaactcttaatcattta 15072226  T
Q  116 cattccaccactaacatattattttaat 143  Q
     |||||||||||||||||||||||||||    
T  15072227 aattccaccactaacatattattttaat 15072254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 8433897 - 8433961
Alignment:
Q  180 tcttaagttagaccttgggtcttagaagacccccaagattttttcccacaatgggagtacctatt 244  Q
    |||||||||||||||||| ||||  |||||||||||  ||||| ||||||||||| |||||||||    
T  8433897 tcttaagttagaccttggatcttttaagacccccaatttttttccccacaatgggggtacctatt 8433961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 28837951 - 28837884
Alignment:
Q  177 aggtcttaagttagaccttgggtcttagaagacccccaagattttttcccacaatgggagtacctatt 244  Q
    ||||||||||||||||| ||||||||| ||||| |||||  ||||| |||||||||  ||||||||||    
T  28837951 aggtcttaagttagaccctgggtcttaaaagactcccaatctttttccccacaatgtcagtacctatt 28837884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 16176246 - 16176306
Alignment:
Q  82 taaatgggtcccacaactaactctttctcatttacattccaccactaacatattattttaat 143  Q
    |||||||||||||| ||||||||||  ||||||| ||| |||||||||||| ||||||||||    
T  16176246 taaatgggtcccaccactaactcttaatcatttagatttcaccactaacat-ttattttaat 16176306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 37194376 - 37194327
Alignment:
Q  17 attttttaataagagtacctaataggtactcattcactccaatggagacc 66  Q
    |||||||||||| |||||||||||||||||||  ||||||||| ||||||    
T  37194376 attttttaataatagtacctaataggtactcaaccactccaatagagacc 37194327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 39324069 - 39324118
Alignment:
Q  17 attttttaataagagtacctaataggtactcattcactccaatggagacc 66  Q
    |||||||||||| ||||| |||||||||||||  ||||||||||||||||    
T  39324069 attttttaataatagtacttaataggtactcaaccactccaatggagacc 39324118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 32273748 - 32273807
Alignment:
Q  155 tgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagacccccaa 215  Q
    |||||||||||||||||||||| |||||||||||| ||  || || |||||||||||||||    
T  32273748 tgtggggaccactaaaagatgg-ggtcttaagttaaactatgagttttagaagacccccaa 32273807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 33207495 - 33207542
Alignment:
Q  19 tttttaataagagtacctaataggtactcattcactccaatggagacc 66  Q
    |||||||||| ||||| |||||||||||||  ||||||||||||||||    
T  33207495 tttttaataatagtacttaataggtactcaaccactccaatggagacc 33207542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 10933607 - 10933561
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatgga 62  Q
    ||||||||||||| ||||| ||||||||||||| ||||| |||||||    
T  10933607 tattttttaataatagtacttaataggtactcaatcacttcaatgga 10933561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 19495002 - 19495044
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaa 58  Q
    |||||| |||||| ||||||||||||||||||| |||||||||    
T  19495002 tattttataataacagtacctaataggtactcagtcactccaa 19495044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 33494724 - 33494774
Alignment:
Q  17 attttttaataagagtacctaataggtactcattcactccaatggagacct 67  Q
    |||||||||||| |||||||||||||||||||   |||||||| |||||||    
T  33494724 attttttaataatagtacctaataggtactcagctactccaatagagacct 33494774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 606581 - 606629
Alignment:
Q  196 gggtcttagaagacccccaagattttttcccacaatgggagtacctatt 244  Q
    |||||||||||||||| |||  ||||| ||||||||||||||| |||||    
T  606581 gggtcttagaagaccctcaaattttttccccacaatgggagtatctatt 606629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 13417254 - 13417302
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggaga 64  Q
    |||||||||| || |||||||||||||||||||  ||||||||| ||||    
T  13417254 tattttttaacaatagtacctaataggtactcaaccactccaatagaga 13417302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 40679089 - 40678865
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||  ||| | |||||       | ||||||||||| ||||| |||| || ||||||||    
T  40679089 tattttttaataacagtacctaataggtactcattcactgcaatatagatcctttggcaaaaagtctaaatgggtcctacaaccaacttttcctcattta 40678990  T
Q  116 cattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagacccccaa 215  Q
    ||||||||||||||||||||||||||||        |||||  |||||||||||||||||| | ||||||||||||||||||||||||||||||| |||     
T  40678989 cattccaccactaacatattattttaataaaaaaa-gtgtgcagggaccactaaaagatgg-gatcttaagttagaccttgggtcttagaagacctcca- 40678893  T
Q  216 gattttttcccacaatgggagtacctatt 244  Q
     | |||||||||| |||| ||||||||||    
T  40678892 -aatttttcccacgatggaagtacctatt 40678865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 82 - 244
Target Start/End: Complemental strand, 8644469 - 8644309
Alignment:
Q  82 taaatgggtcccacaactaactctttctcatttacattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtc 181  Q
    |||||||||| ||| ||||||| ||  ||||||| ||||||||||||  |||||||||||||        ||||||| |||||||| |||||||| ||||    
T  8644469 taaatgggtctcaccactaacttttaatcatttaaattccaccactattatattattttaataaaaaa--gtgtgtgaggaccacttaaagatgg-ggtc 8644373  T
Q  182 ttaagttagaccttgggtcttagaagacccccaagatt-ttttcccacaatgggagtacctatt 244  Q
    |||||||||||||   || ||||||||||||||| |   |||||||||||||||||||||||||    
T  8644372 ttaagttagacctcatgttttagaagacccccaaaaaaattttcccacaatgggagtacctatt 8644309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 244
Target Start/End: Original strand, 67566 - 67718
Alignment:
Q  86 tgggtcccacaactaactctttctcatttacattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaa 185  Q
    |||||||||| ||||||||||  ||||||| |||||||||||||||||||||||||||        || ||||||  ||||| |||||||  ||||||||    
T  67566 tgggtcccaccactaactcttaatcatttaaattccaccactaacatattattttaataaaaaagtgtatgtggg--ccacttaaagatg--ggtcttaa 67661  T
Q  186 gttagaccttgggtcttagaagacccccaagattttttcccacaatgggagtacctatt 244  Q
    |||||||||   |||||| ||||||||||  | |||||||||| || | ||||||||||    
T  67662 gttagacctcatgtcttaaaagaccccca--aatttttcccacgatagaagtacctatt 67718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 244
Target Start/End: Original strand, 31511449 - 31511540
Alignment:
Q  152 gtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagacccccaagattttttcccacaatgggagtacctatt 244  Q
    ||||||||||||||||||||||||| | |||||||||||||| | ||||||||||||| ||||| |   ||||| |||||| |||||||||||    
T  31511449 gtgtgtggggaccactaaaagatgg-gatcttaagttagaccctaggtcttagaagactcccaaaaaaatttcctacaatgagagtacctatt 31511540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 7207104 - 7206881
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    |||||| |||||| ||||| |||||||||| || |||||||||| |||| ||| |         | ||||||||| | |||||||||||||  |||||||    
T  7207104 tattttataataacagtacttaataggtacccagtcactccaatagagatcttctaacaaaaagtctaaatgggttctacaactaactcttaatcattta 7207005  T
Q  116 cattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagacccccaa 215  Q
     ||||||| |||||||||||||||||||        |||||||||    ||| |||||||| |||||||||||||||||   |||||| || | |||| |    
T  7207004 aattccactactaacatattattttaat-aaaaaaagtgtgtggg---aacttaaagatgg-ggtcttaagttagacctcaagtcttacaaaaaccccca 7206910  T
Q  216 gattttttcccacaatgggagtacctatt 244  Q
     ||||||||| ||||| ||||||||||||    
T  7206909 aattttttcctacaataggagtacctatt 7206881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 38901227 - 38901276
Alignment:
Q  17 attttttaataagagtacctaataggtactcattcactccaatggagacc 66  Q
    |||||||||||| |||||||||||||||||||  ||||||||||||||||    
T  38901227 attttttaataatagtacctaataggtactcaaccactccaatggagacc 38901276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 31511365 - 31511413
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggaga 64  Q
    |||||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  31511365 tattttttaataagagtatctaatagatactcattcactccaatagaga 31511413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 17793392 - 17793343
Alignment:
Q  17 attttttaataagagtacctaataggtactcattcactccaatggagacc 66  Q
    |||||||||||| |||||||||||||||||||  ||||| ||||||||||    
T  17793392 attttttaataatagtacctaataggtactcaaccactcaaatggagacc 17793343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 10288159 - 10288115
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatg 60  Q
    ||||||||||||| |||||||||||||||||||  ||||||||||    
T  10288159 tattttttaataatagtacctaataggtactcaaccactccaatg 10288115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 26705769 - 26705817
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggaga 64  Q
    ||||||||||||| |||||||||||||||||||  ||||||||| ||||    
T  26705769 tattttttaataatagtacctaataggtactcaaccactccaatagaga 26705817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 7176692 - 7176739
Alignment:
Q  17 attttttaataagagtacctaataggtactcattcactccaatggaga 64  Q
    |||||||||||| ||||| |||||||||||||  ||||||||||||||    
T  7176692 attttttaataatagtacttaataggtactcaaccactccaatggaga 7176739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 7176835 - 7176905
Alignment:
Q  173 atggaggtcttaagttagaccttgggtcttagaagacccccaagattttttcccacaatgggagtacctatt 244  Q
    |||| |||||||||||||||||||| ||||  |||||||||||  |||||| |||||||||  |||||||||    
T  7176835 atgggggtcttaagttagaccttggatcttttaagacccccaa-ttttttttccacaatggaggtacctatt 7176905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 6107487 - 6107431
Alignment:
Q  82 taaatgggtcccacaactaactctttctcatttacattccaccactaacatattatt 138  Q
    ||||||||||| || ||||||||||  ||||||| ||||||||| ||| ||||||||    
T  6107487 taaatgggtcctaccactaactcttaatcatttaaattccaccattaatatattatt 6107431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 29416737 - 29416689
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggaga 64  Q
    ||||||||||||| ||||||||||||||| |||  ||||| ||||||||    
T  29416737 tattttttaataatagtacctaataggtaatcaaccactctaatggaga 29416689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 40228992 - 40229036
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatg 60  Q
    |||||| |||||| ||||||||||||||||||  |||||||||||    
T  40228992 tattttataataacagtacctaataggtactcggtcactccaatg 40229036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 40229714 - 40229773
Alignment:
Q  152 gtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagacccc 212  Q
    ||||||| |||||||| ||||||| ||||||||||||||||||    ||||||||||||||    
T  40229714 gtgtgtgtggaccacttaaagatg-aggtcttaagttagacctcatctcttagaagacccc 40229773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 33726895 - 33727123
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    ||||||||||||| |||| |||||||||||||||||||||||||  ||||||  |||       | |||||| |||||||||||||||||| ||||||||    
T  33726895 tattttttaataacagtatctaataggtactcattcactccaataaagacctcctggtaaaaagtctaaatgagtcccacaactaactcttcctcattta 33726994  T
Q  116 cattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaa--agatggaggtcttaagttagaccttgggtcttagaagaccccc 213  Q
    ||||||||||||||||||||||||||||          |||||||||||||||||  |||||| |||||||||||||||  || || ||||||||| |||    
T  33726995 cattccaccactaacatattattttaataaaaaaaa--gtgtggggaccactaaaagagatgggggtcttaagttagactctgagttttagaagactccc 33727092  T
Q  214 aagattttttcccacaatgggagtacctatt 244  Q
    || |  | || ||||||||||||||||||||    
T  33727093 aaaaaatatttccacaatgggagtacctatt 33727123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 32827384 - 32827188
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    ||||||||||||| ||||| |||||||||  |||||||||||||  |||||| ||||       | ||||||||| ||||||||||||||| ||||||||    
T  32827384 tattttttaataacagtacataataggtatacattcactccaataaagacctattggctaaaagtctaaatgggttccacaactaactcttcctcattta 32827285  T
Q  116 cattccaccactaacatattatttta--atnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagaccc 211  Q
    ||||||| || ||||||| |||||||  ||        |||||||| ||||||| |||||||| |||||||||||||||| || ||||||||||||||    
T  32827284 cattccatcaataacataatattttaatataaaaaaaagtgtgtggagaccactgaaagatgg-ggtcttaagttagaccatgagtcttagaagaccc 32827188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 244
Target Start/End: Complemental strand, 35616980 - 35616840
Alignment:
Q  101 actctttctcatttacattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtc 200  Q
    |||||| ||| |||||||||||| ||||| ||| |||||||||        ||||||||| ||||||||||||||| |||||||||||||||  ||||||    
T  35616980 actcttcctcgtttacattccactactaatataatattttaataaaaaaa-gtgtgtgggaaccactaaaagatgggggtcttaagttagactctgggtc 35616882  T
Q  201 ttagaagacccccaagattttttcccacaatgggagtacctatt 244  Q
    ||||||||||||  |  |||||| ||||||||||||||||||||    
T  35616881 ttagaagacccc--aactttttttccacaatgggagtacctatt 35616840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 244
Target Start/End: Original strand, 48722022 - 48722112
Alignment:
Q  152 gtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagacccccaagattttttcccacaatgggagtacctatt 244  Q
    ||||||| |||||||| |||| ||| ||||||||||||||||    |||||||||||||||||| |||||| |||||||||||||||||||||    
T  48722022 gtgtgtgaggaccacttaaaggtgg-ggtcttaagttagaccccatgtcttagaagacccccaa-atttttccccacaatgggagtacctatt 48722112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 46592355 - 46592292
Alignment:
Q  80 tttaaatgggtcccacaactaactctttctcatttacattccaccactaacatattattttaat 143  Q
    ||||||||| | ||||||||||||||| |||| |||||||| ||||||||||||||||||||||    
T  46592355 tttaaatggataccacaactaactcttcctcacttacattcaaccactaacatattattttaat 46592292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 32913821 - 32913750
Alignment:
Q  173 atggaggtcttaagttagaccttgggtcttagaagacccccaagattttttcccacaatgggagtacctatt 244  Q
    ||||||||||||||| |||||||||||||||  ||||| |||| | ||||||||||||| |||||| |||||    
T  32913821 atggaggtcttaagtaagaccttgggtcttaagagacctccaaaactttttcccacaataggagtatctatt 32913750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 31636591 - 31636542
Alignment:
Q  17 attttttaataagagtacctaataggtactcattcactccaatggagacc 66  Q
    |||||||||||| |||||||||||||||||||  ||||||||||||||||    
T  31636591 attttttaataatagtacctaataggtactcaaccactccaatggagacc 31636542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 4448089 - 4448041
Alignment:
Q  18 ttttttaataagagtacctaataggtactcattcactccaatggagacc 66  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||||||    
T  4448089 ttttttaataatagtacctaataggtactcaaccactccaatggagacc 4448041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 44573872 - 44573919
Alignment:
Q  17 attttttaataagagtacctaataggtactcattcactccaatggaga 64  Q
    |||||||||||| |||||||||||||||||||  ||||||||||||||    
T  44573872 attttttaataatagtacctaataggtactcaaccactccaatggaga 44573919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 14884728 - 14884679
Alignment:
Q  17 attttttaataagagtacctaataggtactcattcactccaatggagacc 66  Q
    |||||||||||| |||||||||||||||||||  |||||||||| |||||    
T  14884728 attttttaataatagtacctaataggtactcaaccactccaatgaagacc 14884679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 42401127 - 42401078
Alignment:
Q  17 attttttaataagagtacctaataggtactcattcactccaatggagacc 66  Q
    |||||||||||| ||||||||||| | ||||| |||||||||||||||||    
T  42401127 attttttaataacagtacctaataagcactcagtcactccaatggagacc 42401078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 32913985 - 32913938
Alignment:
Q  17 attttttaataagagtacctaataggtactcattcactccaatggaga 64  Q
    |||||||||||| |||| |||||||||||||| |||||||||| ||||    
T  32913985 attttttaataatagtatctaataggtactcaatcactccaatagaga 32913938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 42400967 - 42400928
Alignment:
Q  178 ggtcttaagttagaccttgggtcttagaagacccccaaga 217  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  42400967 ggtcttaagtgagaccctgggtcttagaagacccccaaga 42400928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 33259432 - 33259474
Alignment:
Q  17 attttttaataagagtacctaataggtactcattcactccaat 59  Q
    |||||||||||| ||||| ||||||||||||| ||||||||||    
T  33259432 attttttaataatagtacataataggtactcaatcactccaat 33259474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 33279591 - 33279633
Alignment:
Q  17 attttttaataagagtacctaataggtactcattcactccaat 59  Q
    |||||||||||| ||||| ||||||||||||| ||||||||||    
T  33279591 attttttaataatagtacataataggtactcaatcactccaat 33279633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 14395977 - 14396026
Alignment:
Q  17 attttttaataagagtacctaataggtactcattcactccaatggagacc 66  Q
    |||||||||||| ||||||||||||||||| |  ||||||||| ||||||    
T  14395977 attttttaataatagtacctaataggtacttaaccactccaatagagacc 14396026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 15457039 - 15457084
Alignment:
Q  17 attttttaataagagtacctaataggtactcattcactccaatgga 62  Q
    |||||||||||| ||||||||||| |||||||  ||||||||||||    
T  15457039 attttttaataatagtacctaatatgtactcaaccactccaatgga 15457084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 1775026 - 1774982
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatg 60  Q
    ||||||||||||| |||| ||||||||||||||  ||||||||||    
T  1775026 tattttttaataatagtatctaataggtactcaaccactccaatg 1774982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 3582831 - 3582787
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatg 60  Q
    ||||||||||||| |||| ||||||||||||||  ||||||||||    
T  3582831 tattttttaataatagtatctaataggtactcaaccactccaatg 3582787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 15457223 - 15457279
Alignment:
Q  155 tgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagaccc 211  Q
    ||||||| ||||| ||  || |||||||||||||||||| |||||| ||||||||||    
T  15457223 tgtggggtccacttaagcatcgaggtcttaagttagaccctgggtcctagaagaccc 15457279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 51244082 - 51244114
Alignment:
Q  16 tattttttaataagagtacctaataggtactca 48  Q
    ||||||||||||| |||||||||||||||||||    
T  51244082 tattttttaataatagtacctaataggtactca 51244114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 34968038 - 34967813
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    ||||||||||||| ||||||||||| ||| ||||||||||||||||||| ||  ||        ||||| || ||||||||| |||||||| ||||||||    
T  34968038 tattttttaataatagtacctaatatgtattcattcactccaatggagatctcctgataaaaagtttaagtgagtcccacaattaactcttactcattta 34967939  T
Q  116 cattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagacccccaa 215  Q
    | ||||||||||||||||||||||||||          ||||||| ||||||||||||||| |||||||||||||     ||||||||||||||||||||    
T  34967938 ctttccaccactaacatattattttaataaagaaa---gtgtgggaaccactaaaagatgggggtcttaagttaggttcggggtcttagaagacccccaa 34967842  T
Q  216 gattttttcccacaatgggagtacctatt 244  Q
      |||| ||||||||||| | ||||||||    
T  34967841 atttttctcccacaatggaaatacctatt 34967813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 17000550 - 17000762
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    ||||||||||||| || | ||||||||||||||||||||| |||| ||||||| |||          ||||||||| |||| |||||| ||  |||||||    
T  17000550 tattttttaataatagcatctaataggtactcattcactcaaatgaagaccttatggcaaaaaaacaaaatgggtctcaca-ctaacttttcatcattta 17000648  T
Q  116 cattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtcttaagttagaccttgggtcttagaagacccccaa 215  Q
    ||||||||||||||||||||||||||||        || |||||||| ||||||||||||  |||||||||||||||  ||| |||||||||||||||||    
T  17000649 cattccaccactaacatattattttaataaaaaaa-gtatgtggggatcactaaaagatgagggtcttaagttagactctggatcttagaagacccccaa 17000747  T
Q  216 gattttttcccacaat 231  Q
     |||||| ||||||||    
T  17000748 -atttttccccacaat 17000762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 5356014 - 5355888
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcattta 115  Q
    ||||||||||||| ||||||||||||||||||||||| |||||| ||||| || ||        ||||||||| |||||||  |||||||| ||||||||    
T  5356014 tattttttaataacagtacctaataggtactcattcattccaatagagactttctgacaaaaagtttaaatggatcccacagttaactctt-ctcattta 5355916  T
Q  116 cattccaccactaacatattattttaat 143  Q
    |||||||||| |||||||||||||||||    
T  5355915 cattccaccattaacatattattttaat 5355888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 30833632 - 30833752
Alignment:
Q  23 taataagagtacctaataggtactcattcactccaatggagaccttttggnnnnnnntttaaatgggtcccacaactaactctttctcatttacattcca 122  Q
    |||||| | ||||||||||||||||  ||||||||||||||| ||| |         |||||||||||| ||| ||||||||||  | ||||| ||||||    
T  30833632 taataacaatacctaataggtactcggtcactccaatggagatcttctaacataaagtttaaatgggtctcaccactaactcttaataatttaaattcca 30833731  T
Q  123 ccactaacatattattttaat 143  Q
    |||||||||||||||||||||    
T  30833732 ccactaacatattattttaat 30833752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 30224815 - 30224766
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggagac 65  Q
    ||||||||||||| |||||||||||||||||||  ||||| |||||||||    
T  30224815 tattttttaataatagtacctaataggtactcaaccactctaatggagac 30224766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 30833802 - 30833867
Alignment:
Q  179 gtcttaagttagaccttgggtcttagaagacccccaagattttttcccacaatgggagtacctatt 244  Q
    |||||||||||||||    || |||||||||||||||  |||||||||||||||||| ||||||||    
T  30833802 gtcttaagttagaccccatgtattagaagacccccaaatttttttcccacaatgggaatacctatt 30833867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 33882178 - 33882130
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggaga 64  Q
    ||||||||||||| |||||||||||||||||||  |||| |||||||||    
T  33882178 tattttttaataatagtacctaataggtactcaaccacttcaatggaga 33882130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 37504009 - 37503961
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatggaga 64  Q
    ||||||||||||| |||| ||||||||||||||  ||||||||||||||    
T  37504009 tattttttaataatagtatctaataggtactcaaccactccaatggaga 37503961  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 958164 - 958229
Alignment:
Q  178 ggtcttaagttagaccttgggtcttagaagacccccaagattttttcccacaatgggagtacctatt 244  Q
    |||||||||||||||| |||||||||  ||||||||||  |||| ||||||| |||| |||||||||    
T  958164 ggtcttaagttagaccctgggtcttaagagacccccaattttttctcccacattggg-gtacctatt 958229  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 27816573 - 27816524
Alignment:
Q  17 attttttaataagagtacctaataggtactcattcactccaatggagacc 66  Q
    |||||| ||||| |||| |||||||||||| | |||||||||||||||||    
T  27816573 atttttaaataatagtatctaataggtactaaatcactccaatggagacc 27816524  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 958004 - 958048
Alignment:
Q  16 tattttttaataagagtacctaataggtactcattcactccaatg 60  Q
    ||||||||||||| ||||||||||||||||| |  ||||||||||    
T  958004 tattttttaataatagtacctaataggtacttaaccactccaatg 958048  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 82 - 244
Target Start/End: Original strand, 32025733 - 32025893
Alignment:
Q  82 taaatgggtcccacaactaactctttctcatttacattccaccactaacatattattttaatnnnnnnnngtgtgtggggaccactaaaagatggaggtc 181  Q
    |||||||||||||| | || |||||  ||||||| |||||||||||||||||||||||||||        |||||||||||||||| |||||||| ||||    
T  32025733 taaatgggtcccaccattacctcttaatcatttaaattccaccactaacatattattttaataaagaa--gtgtgtggggaccacttaaagatgggggtc 32025830  T
Q  182 ttaagttagaccttgggtcttagaagacccccaagattttttcccacaatgggagtacctatt 244  Q
    ||||||||||||    ||||||||| ||||||||  ||||||||  |||||||||||||||||    
T  32025831 ttaagttagaccccatgtcttagaaaacccccaaatttttttcctgcaatgggagtacctatt 32025893  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 378692 - 378643
Alignment:
Q  17 attttttaataagagtacctaataggtactcattcactccaatggagacc 66  Q
    |||||||||||| ||||||||||||||||| |  ||||||||||||||||    
T  378692 attttttaataatagtacctaataggtactaaaccactccaatggagacc 378643  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 6793900 - 6793944
Alignment:
Q  18 ttttttaataagagtacctaataggtactcattcactccaatgga 62  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||    
T  6793900 ttttttaataatagtacctaataggtactcaaccactccaatgga 6793944  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 4405691 - 4405736
Alignment:
Q  19 tttttaataagagtacctaataggtactcattcactccaatggaga 64  Q
    |||||||||||||||||||| || ||||||  ||||||||||||||    
T  4405691 tttttaataagagtacctaacagctactcaaccactccaatggaga 4405736  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 11703167 - 11703216
Alignment:
Q  17 attttttaataagagtacctaataggtactcattcactccaatggagacc 66  Q
    |||||||||| | |||||||||||||||||||  ||||||||| ||||||    
T  11703167 attttttaatgatagtacctaataggtactcaaccactccaatagagacc 11703216  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 29383794 - 29383859
Alignment:
Q  179 gtcttaagttagaccttgggtcttagaagacccccaagattttttcccacaatgggagtacctatt 244  Q
    ||||||| ||||||||||  ||||  ||||||| |||  ||||||||||||||||| |||||||||    
T  29383794 gtcttaatttagaccttgcatcttttaagaccctcaaatttttttcccacaatgggggtacctatt 29383859  T

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Target: scaffold1114 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 2423 - 2377
Alignment:
Q  20 ttttaataagagtacctaataggtactcattcactccaatggagacc 66  Q
    ||||||||| |||||||||||||||||||  ||||||||||||||||    
T  2423 ttttaataatagtacctaataggtactcaaccactccaatggagacc 2377  T

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Target: scaffold0110 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 26734 - 26783
Alignment:
Q  17 attttttaataagagtacctaataggtactcattcactccaatggagacc 66  Q
    |||||||||||| ||||||||||||||| |||  ||||||||| ||||||    
T  26734 attttttaataatagtacctaataggtattcaaccactccaatagagacc 26783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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