View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21406_low_38 (Length: 246)
Name: NF21406_low_38
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21406_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 50814432 - 50814192
Alignment:
| Q |
1 |
aatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttcgttaagatggcagagatttatgcttaggt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50814432 |
aatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaagaaggcagtgtggtttcgttaagatggcagagatttatgcttaggt |
50814333 |
T |
|
| Q |
101 |
tttcaactcctgaagtaattgcagcataaaccaaattgttgaaatcgttcttgtctatgaagctatagcgaaaattaagctggaacgagaggatgggtag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
50814332 |
tttcaactcctgaagtaattgcagcataaaccaaattgttgaaatcgttcttgtctatgaagctatagcgacaattaagctggaacgagaggatgggtag |
50814233 |
T |
|
| Q |
201 |
actcttatcccgcatgctcatgaaggagtagaataatttac |
241 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50814232 |
actcttatcccgcatgctcatgaaggagtagaagaatttac |
50814192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 50861432 - 50861672
Alignment:
| Q |
1 |
aatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttcgttaagatggcagagatttatgcttaggt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50861432 |
aatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaagaaggcagtgtggtttcgttaagatggcagagatttatgcttaggt |
50861531 |
T |
|
| Q |
101 |
tttcaactcctgaagtaattgcagcataaaccaaattgttgaaatcgttcttgtctatgaagctatagcgaaaattaagctggaacgagaggatgggtag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
50861532 |
tttcaactcctgaagtaattgcagcataaaccaaattgttgaaatcgttcttgtctatgaagctatagcgacaattaagctggaacgagaggatgggtag |
50861631 |
T |
|
| Q |
201 |
actcttatcccgcatgctcatgaaggagtagaataatttac |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50861632 |
actcttatcccgcatgctcatgaaggagtagaagaatttac |
50861672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 39558832 - 39558593
Alignment:
| Q |
1 |
aatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttcg---ttaagatggcagagatttatgctta |
97 |
Q |
| |
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|||||||| ||||||||||||||| ||||||||||||| ||||||||| |||| ||||||| || | ||| ||| | ||||||||| ||||||| |
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| T |
39558832 |
aatgttacactcttcaatttgaggactgtcaaggttttggtagttagaaccaaagcaggcagtatgatatcggagttatacttgcagagattgatgctta |
39558733 |
T |
|
| Q |
98 |
ggttttcaactcctgaagtaattgcagcataaaccaaattgttgaaatcgttcttgtctatgaagctatagcgaaaattaagctggaacgagaggatggg |
197 |
Q |
| |
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|||||||||||||| ||||||||||||| |||||||||| || |||| | || | |||| | || | ||||||| ||||| ||||||||||| |
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| T |
39558732 |
ggttttcaactcctcctataattgcagcatataccaaattgtaaaagtcgtagtcgtagaagaagtagtggctacaattaaggtggaa-gagaggatggg |
39558634 |
T |
|
| Q |
198 |
tagactcttatcccgcatgctcatgaaggagtagaataatt |
238 |
Q |
| |
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|| | ||||||| ||||||||||| ||||||||||| |||| |
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|
| T |
39558633 |
taaattcttatctcgcatgctcattaaggagtagaagaatt |
39558593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 39559093 - 39558983
Alignment:
| Q |
1 |
aatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttcgttaagatggcagagatttatgcttaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||||||| |||| ||||| |||||||| | ||||||||||| |||||||||| |
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| T |
39559093 |
aatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggttttggatttatggcagagatcgatgcttaggt |
39558994 |
T |
|
| Q |
101 |
tttcaactcct |
111 |
Q |
| |
|
||||||||||| |
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|
| T |
39558993 |
tttcaactcct |
39558983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 50814705 - 50814634
Alignment:
| Q |
1 |
aatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttcg |
72 |
Q |
| |
|
||||||| ||||||||||||||| |||| ||||||| ||||||| ||||||| ||||||| |||||||| |
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| T |
50814705 |
aatgttatcctcttcaatttgagttgggtcagggttttggtagttaggatgaaagaaggcagtatggtttcg |
50814634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 50861159 - 50861230
Alignment:
| Q |
1 |
aatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttcg |
72 |
Q |
| |
|
||||||| ||||||||||||||| |||| ||||||| ||||||| ||||||| ||||||| |||||||| |
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| T |
50861159 |
aatgttatcctcttcaatttgagttgggtcagggttttggtagttaggatgaaagaaggcagtatggtttcg |
50861230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 31211027 - 31210981
Alignment:
| Q |
3 |
tgttaccctcttcaatttgagggatgtcaaggttttgctagttagaa |
49 |
Q |
| |
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|||||| ||||||||||||||| |||||||||||||| || |||||| |
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| T |
31211027 |
tgttacgctcttcaatttgaggaatgtcaaggttttggtatttagaa |
31210981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 19370982 - 19371034
Alignment:
| Q |
3 |
tgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaag |
55 |
Q |
| |
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||||| |||||||||||||||| ||| |||||||||| |||||||| ||||| |
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| T |
19370982 |
tgttatcctcttcaatttgaggaatgccaaggttttggaagttagaaggaaag |
19371034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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