View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21406_low_39 (Length: 238)
Name: NF21406_low_39
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21406_low_39 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 21937974 - 21937741
Alignment:
| Q |
18 |
tatatcctattaaaaactcttctacttcattttatttcaatgactacattccactcttctcttatctc-------------cattttgaataatatgtta |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||| |
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| T |
21937974 |
tatatcctattaaaaactcttctacttcattttatttcaatgactatattccactcttctcttatgtcaatagctaaaatccattttgaataatatgtta |
21937875 |
T |
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| Q |
105 |
atatgttcaatttatatttgtagtaaaaaattgaatttagattctctcaagttggaatcccaaatcaaaggggttatattgatactctctccttaaaatt |
204 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21937874 |
atatgttcaatttatatttgtagtaaaaaattgtatttggattctctcaagttggaatcccaaatcaaaggggttatattgatactctctccttaaaatt |
21937775 |
T |
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| Q |
205 |
cattagatacctcttaaatattattaagatgtat |
238 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
21937774 |
cattagatacctcttaaatatttttaagatgtat |
21937741 |
T |
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