View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21406_low_4 (Length: 585)
Name: NF21406_low_4
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21406_low_4 |
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| [»] scaffold0362 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 40 - 566
Target Start/End: Complemental strand, 12805808 - 12805283
Alignment:
| Q |
40 |
tacttgttacgatttggtgcatttaccaatttcgttcatcagtcacgcgaataggaaattcaagcacgcttaactatgtagtttttatggtatgagcttg |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12805808 |
tacttgttacgatttggtgcatttaccaatttcgttcatcagtcacacgaataggaaattcaagcacgcttaactatgtagtttttatggtatgagcttc |
12805709 |
T |
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| Q |
140 |
caaaaagaaaaagggggatgctatatgtcccgacaaattatctagcgacaacttcgcgaatggaaattgctttgataacnnnnnnnnnnntgctcccact |
239 |
Q |
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| T |
12805708 |
caaaaagaaaaagggggatgctatatgtcccgacaaattatctagcgacaacttcgcgaatggaaattgctttgataacaaaaaaaaaa-tgctcccact |
12805610 |
T |
|
| Q |
240 |
aaccaagcattatgtcagcacaataaatgtagaagtgttttaaagagtcgtgatactttcgtgattccatttttcgctttatacattattttccaaagaa |
339 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12805609 |
aaccaaacattatgtcagcacaataaatgcagaagtgttttaaagagtcgtgatactttcgtgattccatttttcgctttatacattattttccaaagaa |
12805510 |
T |
|
| Q |
340 |
aaatgcctcttatttgtataggtagtgcaaatcaattcttataagtttttcttcaactatacggtcaaagacctgcacaacctcatattgtctctatttt |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12805509 |
aaatgcctcttatttgtataggtagtgcaaatcaattcttataagtttttcttcaactatacggtcaaagacctgcacaacctcatattgtctctatttt |
12805410 |
T |
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| Q |
440 |
caatgtaaatttggttaattcatgtgcccacttacctataagcatgtccaaagccacttattgaatatgcttcatgcatcaaagatcactccctgcccgc |
539 |
Q |
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| T |
12805409 |
caatgtaaatttggttaattcacgtgtccacttgcctataagcatgtccaaagccacttattgaatatgcttcatgcatcaaagatcactccctgcccgc |
12805310 |
T |
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| Q |
540 |
atcagcgtcatacttcacatgcccaaa |
566 |
Q |
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| T |
12805309 |
atcagcctcatacttcacatgcccaaa |
12805283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 17629070 - 17628995
Alignment:
| Q |
347 |
tcttatttgtataggtagtgcaaatcaattcttataagtttttcttcaactatacggtcaaagacctgcacaacct |
422 |
Q |
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||||||| ||||||||||| | || |||||||||||||||||| |||||| |||| ||| | |||||||| |||| |
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| T |
17629070 |
tcttattagtataggtagtaccaaacaattcttataagtttttattcaaccatacattcacatacctgcacgacct |
17628995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 51837481 - 51837549
Alignment:
| Q |
150 |
aagggggatgctatatgtcccgacaaattatctagcgacaacttcgcga-atggaaattgctttgataa |
217 |
Q |
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| T |
51837481 |
aagggggatgctatatatcccgataaaatatctagcgaaagcttcacgatttgaaaattgctttgataa |
51837549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 499 - 564
Target Start/End: Complemental strand, 3656179 - 3656114
Alignment:
| Q |
499 |
attgaatatgcttcatgcatcaaagatcactccctgcccgcatcagcgtcatacttcacatgccca |
564 |
Q |
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| T |
3656179 |
attgaacatgcttcatgcatcaacaatcactccatgccctcatcagcgtcaagctccacatgccca |
3656114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 13194301 - 13194341
Alignment:
| Q |
40 |
tacttgttacgatttggtgcatttaccaatttcgttcatca |
80 |
Q |
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| T |
13194301 |
tacttgttacgatttggtgcacttgccaatttcgtccatca |
13194341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 7494484 - 7494557
Alignment:
| Q |
17 |
cctgtggagaatgataaacttacta--------cttgttacgatttggtgcatttaccaatttcgttcatcagt |
82 |
Q |
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| T |
7494484 |
cctgtggagaatgataaacttactaatttattacttgttacgatttggtgcacttgccaatttcgtccatcagt |
7494557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 4091386 - 4091346
Alignment:
| Q |
40 |
tacttgttacgatttggtgcatttaccaatttcgttcatca |
80 |
Q |
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|||||||||||||||||| || || |||||||||||||||| |
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| T |
4091386 |
tacttgttacgatttggtacacttgccaatttcgttcatca |
4091346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 21544720 - 21544680
Alignment:
| Q |
40 |
tacttgttacgatttggtgcatttaccaatttcgttcatca |
80 |
Q |
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||||||||||||||||||||| || |||||||||| ||||| |
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| T |
21544720 |
tacttgttacgatttggtgcacttgccaatttcgtccatca |
21544680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 26853632 - 26853673
Alignment:
| Q |
40 |
tacttgttacgatttggtgcatttaccaatttcgttcatcag |
81 |
Q |
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|||||||||||||||||||||||| |||||||| | |||||| |
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| T |
26853632 |
tacttgttacgatttggtgcattttccaatttcatccatcag |
26853673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0362 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0362
Description:
Target: scaffold0362; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 9983 - 10015
Alignment:
| Q |
40 |
tacttgttacgatttggtgcatttaccaatttc |
72 |
Q |
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| T |
9983 |
tacttgttacgatttggtgcatttgccaatttc |
10015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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