View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21406_low_40 (Length: 237)
Name: NF21406_low_40
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21406_low_40 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 40577934 - 40578017
Alignment:
| Q |
154 |
gaaggtggttttgggatcggagaaagaagctcaacttgtctatgactcttcctctgaactctttcaagaaccttcaatggatcc |
237 |
Q |
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| T |
40577934 |
gaaggtggttttgggatcggagaaagaagctcaacttgtctatgactcttcctctgaactctttcaagaaccttcaatggatcc |
40578017 |
T |
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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 45390895 - 45390964
Alignment:
| Q |
164 |
ttgggatcggagaaagaagctcaacttgtctatgactcttcctctgaactctttcaagaaccttcaatgg |
233 |
Q |
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| T |
45390895 |
ttgggatcggagaaagaagctcaacctttctatgactcttcttctgaaccctttccaaaaccttcaatgg |
45390964 |
T |
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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 45386526 - 45386595
Alignment:
| Q |
164 |
ttgggatcggagaaagaagctcaacttgtctatgactcttcctctgaactctttcaagaaccttcaatgg |
233 |
Q |
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| T |
45386526 |
ttgggatcggagaaagaagctcaaccttcctgtgactcttcttctgaaccctctccaaaaccttcaatgg |
45386595 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 734503 - 734572
Alignment:
| Q |
164 |
ttgggatcggagaaagaagctcaacttgtctatgactcttcctctgaactctttcaagaaccttcaatgg |
233 |
Q |
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| T |
734503 |
ttgggatcggagaaagaagctcaaccttcctatgactcttcttctgaaccctttccaaaaccttcaatgg |
734572 |
T |
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