View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21406_low_42 (Length: 236)
Name: NF21406_low_42
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21406_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 18617051 - 18616837
Alignment:
| Q |
1 |
atcataaccatgaataccttcaacaatcatcaacaagcccctatatcatatccaccaccaggtgagacctattctacatctccatatgttactgccccac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18617051 |
atcataaccatgaataccttcaacaatcatcaacaagcccctatatcatatccaccaccaggtgagacctattctacatctccatatgttactgccccac |
18616952 |
T |
|
| Q |
101 |
cacctatgggttaccctacaaaagatggtccagctgaaggataccctaaccaaaggattccagaccaaagcactaccagaggtgatggtttctggaaggg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18616951 |
cacctatgggttaccctacaaaagatggtccagctgaaggataccctaaccaaaggattccagaccaaagcactaccagaggtgatggtttctggaaggg |
18616852 |
T |
|
| Q |
201 |
atgttgtgctgctct |
215 |
Q |
| |
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||||||||||||||| |
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| T |
18616851 |
atgttgtgctgctct |
18616837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 15110633 - 15110847
Alignment:
| Q |
1 |
atcataaccatgaataccttcaacaatcatcaacaagcccctatatcatatccaccaccaggtgagacctattctacatctccatatgttactgccccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15110633 |
atcataaccatgaataccttcaacaatcatcaacaagcccctatatcatatccaccaccaggtgagacctattctacatctccatatgttactgccccac |
15110732 |
T |
|
| Q |
101 |
cacctatgggttaccctacaaaagatggtccagctgaaggataccctaaccaaaggattccagaccaaagcactaccagaggtgatggtttctggaaggg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15110733 |
cacctatgggttaccctacaaaagatggtccagctgaaggataccctaaccaaaggattccagaccaaagcactaccagaggtgatggtttctggaaggg |
15110832 |
T |
|
| Q |
201 |
atgttgtgctgctct |
215 |
Q |
| |
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||||||||||||||| |
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| T |
15110833 |
atgttgtgctgctct |
15110847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 15099398 - 15099612
Alignment:
| Q |
1 |
atcataaccatgaataccttcaacaatcatcaacaagcccctatatcatatccaccaccaggtgagacctattctacatctccatatgttactgccccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15099398 |
atcataaccatgaataccttcaacaatcatcaacaagcccctatatcatatccaccaccaggtgagacctattctacatctccatatgttactgccccac |
15099497 |
T |
|
| Q |
101 |
cacctatgggttaccctacaaaagatggtccagctgaaggataccctaaccaaaggattccagaccaaagcactaccagaggtgatggtttctggaaggg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
15099498 |
cacctatgggttaccctacaaaagatggtccagctgaaggataccctaaccaaaggattccagaccaaaccactaccagaggtgatggtttctggaaggg |
15099597 |
T |
|
| Q |
201 |
atgttgtgctgctct |
215 |
Q |
| |
|
||||||||||||||| |
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|
| T |
15099598 |
atgttgtgctgctct |
15099612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 215
Target Start/End: Original strand, 36059435 - 36059603
Alignment:
| Q |
44 |
tatcatatccaccaccaggtgagacctattctacatctccatatgttactgccccaccacctatgggttaccctacaaaagatggtccagctgaaggata |
143 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||| ||| |||||| ||||||||||||||||||||||| ||| | || ||||| ||| ||| || |
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|
| T |
36059435 |
tatcatatccaccacctggtgaggcctattctacacctcaatatgtaactgccccaccacctatgggttatccttccaaggatgg---ctctgcagggta |
36059531 |
T |
|
| Q |
144 |
ccctaaccaaaggattccagaccaaagcactaccagaggtgatggtttctggaagggatgttgtgctgctct |
215 |
Q |
| |
|
||| | ||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||| |
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|
| T |
36059532 |
cccccaacaaaggattccagaccaaaccactagcaggggtgatggtttctggaaaggatgttgtgctgctct |
36059603 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 28862871 - 28862670
Alignment:
| Q |
9 |
catgaataccttcaacaatcatcaacaagcccctatatcatatccaccaccaggtgagacctattctacatctccatatgttactgccccaccacctatg |
108 |
Q |
| |
|
||||| || |||||||||||| ||||||||||| ||||||||||||||| ||||||| |||||| || | |||||||| |||||||||||||||||| |
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| T |
28862871 |
catgagtaacttcaacaatcagcaacaagccccagtatcatatccaccacaaggtgagggttattcttcagcaccatatgtaactgccccaccacctatg |
28862772 |
T |
|
| Q |
109 |
ggttaccctacaaaagatggtccagctgaaggataccctaaccaaaggattccagaccaaagcactaccagaggtgatggtttctggaagggatgttgtg |
208 |
Q |
| |
|
||||| ||| | || ||||| || |||| |||||| | |||| |||| ||||||||| |||| ||| |||||||||||||||||||||||||||| |
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|
| T |
28862771 |
ggttatccttccaaggatgg---ctctcaagggtaccctcaacaaaagatttcagaccaaactactagcaggggtgatggtttctggaagggatgttgtg |
28862675 |
T |
|
| Q |
209 |
ctgct |
213 |
Q |
| |
|
||||| |
|
|
| T |
28862674 |
ctgct |
28862670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 213
Target Start/End: Original strand, 28865391 - 28865573
Alignment:
| Q |
22 |
aacaatcatcaacaagcccctatatcatatccaccaccaggtgagacctattctacatctccatatgttactgccccaccacctatgggttaccctacaa |
121 |
Q |
| |
|
|||||||| |||||| |||| ||||||||||||||| || | |||||| || |||||||||| ||||||||||||||||||||||| ||| | | |
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|
| T |
28865391 |
aacaatcagcaacaaaccccagtatcatatccaccac------aggcttattcttcagctccatatgtaactgccccaccacctatgggttatccttcca |
28865484 |
T |
|
| Q |
122 |
aagatggtccagctgaaggataccctaaccaaaggattccagaccaaagcactaccagaggtgatggtttctggaagggatgttgtgctgct |
213 |
Q |
| |
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| ||||| | | |||| |||||| | |||| |||| ||||||||| |||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
28865485 |
aggatggctc---tcaagggtaccctcaacaaaagatttcagaccaaactactagcaggggtgatggtttctggaagggatgttgtgctgct |
28865573 |
T |
|
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