View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21406_low_44 (Length: 222)
Name: NF21406_low_44
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21406_low_44 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 36250719 - 36250918
Alignment:
| Q |
1 |
tagcattgagtcaaatgcttcgagcaatgagggaaaatcaaactcttccaactgaacatgagaatgacgggggcgaccaaaagcagtccatagcacatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36250719 |
tagcattgagtcaaatgcttcgagcaatgagggaaaatcaaactcttccaactgaacatgagaatgacgggggcgaccaaaagcagtccatagcacatca |
36250818 |
T |
|
| Q |
101 |
gaagaagaaggttggattcattcgaatatcattcccctttggaaagcgaaatgataaaaagacatgaattcaatcctaatgcttatgccacagctcgtgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
36250819 |
gaagaagaaggttggattcattcgaatatcattcccctttggaaagcgaaatgataaaaagacatgaattcaattctaatgcttatgtcacagctcgtgc |
36250918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University