View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21406_low_45 (Length: 220)

Name: NF21406_low_45
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21406_low_45
NF21406_low_45
[»] chr4 (24 HSPs)
chr4 (6-162)||(21937474-21937630)
chr4 (185-220)||(44221473-44221508)
chr4 (175-220)||(19908718-19908765)
chr4 (175-220)||(37930835-37930882)
chr4 (185-220)||(14542760-14542795)
chr4 (185-220)||(17216129-17216164)
chr4 (185-216)||(19124622-19124653)
chr4 (185-220)||(22630360-22630395)
chr4 (185-220)||(43034342-43034377)
chr4 (185-220)||(47806256-47806291)
chr4 (185-220)||(49308846-49308881)
chr4 (185-220)||(52132302-52132337)
chr4 (186-220)||(1701635-1701669)
chr4 (186-220)||(9990292-9990326)
chr4 (186-220)||(20403169-20403203)
chr4 (187-220)||(6520097-6520130)
chr4 (188-220)||(10006366-10006398)
chr4 (188-220)||(12698623-12698655)
chr4 (192-220)||(21623426-21623454)
chr4 (175-220)||(24664979-24665026)
chr4 (188-220)||(25978343-25978375)
chr4 (192-220)||(33758811-33758839)
chr4 (188-220)||(38416083-38416115)
chr4 (188-220)||(56497611-56497643)
[»] chr2 (19 HSPs)
chr2 (185-220)||(24393271-24393306)
chr2 (185-218)||(34903545-34903578)
chr2 (184-220)||(27152379-27152415)
chr2 (185-220)||(2256997-2257032)
chr2 (185-220)||(3503000-3503035)
chr2 (185-220)||(10723965-10724000)
chr2 (185-220)||(12413519-12413554)
chr2 (185-220)||(12425579-12425614)
chr2 (185-220)||(42475110-42475145)
chr2 (185-220)||(43117190-43117225)
chr2 (185-220)||(43356542-43356577)
chr2 (186-220)||(19549462-19549496)
chr2 (187-220)||(40096857-40096890)
chr2 (188-220)||(6579284-6579316)
chr2 (175-216)||(12599853-12599896)
chr2 (188-220)||(20239369-20239401)
chr2 (185-213)||(25048838-25048866)
chr2 (186-218)||(35757402-35757434)
chr2 (188-220)||(41778947-41778979)
[»] chr1 (20 HSPs)
chr1 (185-220)||(29251780-29251815)
chr1 (185-220)||(17221520-17221555)
chr1 (185-220)||(22335384-22335419)
chr1 (185-220)||(28039860-28039895)
chr1 (185-220)||(30561749-30561784)
chr1 (185-220)||(33020043-33020078)
chr1 (175-218)||(5280659-5280704)
chr1 (186-220)||(10132445-10132479)
chr1 (186-220)||(13054899-13054933)
chr1 (186-220)||(41362645-41362679)
chr1 (185-215)||(41950084-41950114)
chr1 (175-220)||(2665290-2665338)
chr1 (191-220)||(14880854-14880883)
chr1 (191-220)||(28832177-28832206)
chr1 (185-218)||(35778201-35778234)
chr1 (185-218)||(46335059-46335092)
chr1 (186-218)||(5033571-5033603)
chr1 (177-220)||(10356705-10356749)
chr1 (175-220)||(29233962-29234009)
chr1 (175-220)||(29987100-29987147)
[»] chr3 (17 HSPs)
chr3 (187-220)||(42074129-42074162)
chr3 (188-220)||(8139741-8139773)
chr3 (188-220)||(14771357-14771389)
chr3 (185-220)||(8075811-8075846)
chr3 (185-220)||(13829077-13829112)
chr3 (185-220)||(25505701-25505736)
chr3 (185-220)||(30200852-30200887)
chr3 (185-220)||(35191817-35191852)
chr3 (185-220)||(45096052-45096087)
chr3 (185-220)||(46253897-46253932)
chr3 (185-220)||(53207996-53208031)
chr3 (186-220)||(5702179-5702213)
chr3 (191-220)||(28430571-28430600)
chr3 (185-218)||(45885477-45885510)
chr3 (188-220)||(4760133-4760165)
chr3 (188-220)||(15507274-15507306)
chr3 (188-220)||(53996325-53996357)
[»] scaffold0334 (1 HSPs)
scaffold0334 (175-220)||(5208-5255)
[»] chr7 (8 HSPs)
chr7 (188-220)||(6768710-6768742)
chr7 (184-220)||(7872747-7872783)
chr7 (185-220)||(6384877-6384912)
chr7 (185-220)||(25923417-25923452)
chr7 (187-220)||(26009302-26009335)
chr7 (175-220)||(1399188-1399235)
chr7 (175-220)||(21105629-21105676)
chr7 (192-220)||(44558781-44558809)
[»] chr6 (10 HSPs)
chr6 (188-220)||(30639429-30639461)
chr6 (185-220)||(12808895-12808930)
chr6 (187-220)||(1918460-1918493)
chr6 (191-220)||(14049890-14049919)
chr6 (191-220)||(17113466-17113495)
chr6 (191-220)||(34701173-34701202)
chr6 (175-220)||(9977083-9977130)
chr6 (188-220)||(10778866-10778898)
chr6 (175-220)||(15187089-15187136)
chr6 (175-220)||(15473470-15473517)
[»] chr5 (13 HSPs)
chr5 (188-220)||(11017202-11017234)
chr5 (185-216)||(3222761-3222792)
chr5 (185-220)||(5107245-5107280)
chr5 (186-220)||(17144505-17144539)
chr5 (186-220)||(31708147-31708181)
chr5 (175-220)||(37614329-37614375)
chr5 (175-220)||(37791066-37791112)
chr5 (191-220)||(5974231-5974260)
chr5 (186-219)||(17465396-17465429)
chr5 (187-220)||(25607060-25607093)
chr5 (185-218)||(35807741-35807774)
chr5 (191-220)||(40446009-40446038)
chr5 (192-220)||(8210162-8210190)
[»] chr8 (8 HSPs)
chr8 (185-220)||(30623319-30623354)
chr8 (185-220)||(38763515-38763550)
chr8 (186-216)||(13032363-13032393)
chr8 (191-220)||(8442493-8442522)
chr8 (175-220)||(27050769-27050816)
chr8 (175-220)||(32944828-32944875)
chr8 (184-220)||(39821910-39821946)
chr8 (188-220)||(45396590-45396622)
[»] scaffold0008 (1 HSPs)
scaffold0008 (188-220)||(119201-119233)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 6 - 162
Target Start/End: Complemental strand, 21937630 - 21937474
Alignment:
Q  6 cttactaaattttaaattgtaacataaaattctagagtttaaattactattttagtaattgctattgaatctggtttgatatgctaagagtgtggtgtca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21937630 cttactaaattttaaattgtaacataaaattctagagtttaaattactattttagtaattgctattgaatctggtttgatatgctaagagtgtggtgtca 21937531  T
Q  106 ctatcaatcaaacgtaccacatttgtcttcaataagcaaggtcatagcacaaacaat 162  Q
    |||||||||||||| |||||||||||||||||||||||||  |||||| ||||||||    
T  21937530 ctatcaatcaaacgcaccacatttgtcttcaataagcaagaccatagctcaaacaat 21937474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 44221508 - 44221473
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  44221508 gggttcgaacctcagaccttgcatatattatgcatt 44221473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 19908765 - 19908718
Alignment:
Q  175 ttgtggtggt--gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||  ||||||||||||| ||||||||||||||||||||||    
T  19908765 ttgtggtggtcggggttcgaacctcggaccttgcatatattatgcatt 19908718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 37930835 - 37930882
Alignment:
Q  175 ttgtggtggt--gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||||||    
T  37930835 ttgtggtggtcggggtttgaacctcagaccttgcatatattatgcatt 37930882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 14542760 - 14542795
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||| ||||||||||||||||||||||||    
T  14542760 gggttcgaaccccagaccttgcatatattatgcatt 14542795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 17216129 - 17216164
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||||| |||||||||||||||||||||||||    
T  17216129 gggttcgaacttcagaccttgcatatattatgcatt 17216164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 216
Target Start/End: Original strand, 19124622 - 19124653
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatg 216  Q
    ||||||||||||||||||||||||||||||||    
T  19124622 gggttcgaacctcagaccttgcatatattatg 19124653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 22630360 - 22630395
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||| ||||||||||||||||||||||||||||||    
T  22630360 gggtttgaacctcagaccttgcatatattatgcatt 22630395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 43034342 - 43034377
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||| ||||||||||||||||||||||||||||||    
T  43034342 gggtttgaacctcagaccttgcatatattatgcatt 43034377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 47806256 - 47806291
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||| ||||||||||||||||||||||||    
T  47806256 gggttcgaaccccagaccttgcatatattatgcatt 47806291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 49308881 - 49308846
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||| ||||||||||||||||||||||||    
T  49308881 gggttcgaaccccagaccttgcatatattatgcatt 49308846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 52132302 - 52132337
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||| ||||||||||||||||||||||||    
T  52132302 gggttcgaaccacagaccttgcatatattatgcatt 52132337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 1701669 - 1701635
Alignment:
Q  186 ggttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||||||| ||||||||||||||||||||||    
T  1701669 ggttcgaacctcggaccttgcatatattatgcatt 1701635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 9990326 - 9990292
Alignment:
Q  186 ggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||||| |||||||||||||||||||    
T  9990326 ggttcgaacctcagatcttgcatatattatgcatt 9990292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 20403169 - 20403203
Alignment:
Q  186 ggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||| |||||||||||||||||||||||||    
T  20403169 ggttcgaacttcagaccttgcatatattatgcatt 20403203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 6520130 - 6520097
Alignment:
Q  187 gttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||||||| |||||||||||||||||||||    
T  6520130 gttcgaacctcaaaccttgcatatattatgcatt 6520097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 10006398 - 10006366
Alignment:
Q  188 ttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||| ||||||||||||||||||||||||    
T  10006398 ttcgaaccccagaccttgcatatattatgcatt 10006366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 12698655 - 12698623
Alignment:
Q  188 ttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||| ||||||||||||||||||||||||    
T  12698655 ttcgaaccccagaccttgcatatattatgcatt 12698623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 220
Target Start/End: Original strand, 21623426 - 21623454
Alignment:
Q  192 aacctcagaccttgcatatattatgcatt 220  Q
    |||||||||||||||||||||||||||||    
T  21623426 aacctcagaccttgcatatattatgcatt 21623454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 24664979 - 24665026
Alignment:
Q  175 ttgtggtggt--gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||  ||||||||||| | ||||||||||||||||||||||    
T  24664979 ttgtggtggtcggggttcgaaccccggaccttgcatatattatgcatt 24665026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 25978375 - 25978343
Alignment:
Q  188 ttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||||| ||||||||||||||||||||||    
T  25978375 ttcgaacctcggaccttgcatatattatgcatt 25978343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 220
Target Start/End: Original strand, 33758811 - 33758839
Alignment:
Q  192 aacctcagaccttgcatatattatgcatt 220  Q
    |||||||||||||||||||||||||||||    
T  33758811 aacctcagaccttgcatatattatgcatt 33758839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 38416115 - 38416083
Alignment:
Q  188 ttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||| |||||||||||||||||||||    
T  38416115 ttcgaacctcataccttgcatatattatgcatt 38416083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 56497611 - 56497643
Alignment:
Q  188 ttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||| ||||||||||||||||||||||||    
T  56497611 ttcgaaccccagaccttgcatatattatgcatt 56497643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 24393306 - 24393271
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  24393306 gggttcgaacctcagaccttgcatatattatgcatt 24393271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 34903578 - 34903545
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgca 218  Q
    ||||||||||||||||||||||||||||||||||    
T  34903578 gggttcgaacctcagaccttgcatatattatgca 34903545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 27152415 - 27152379
Alignment:
Q  184 tgggttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||||||| ||||||||||||||||||||||||    
T  27152415 tgggttcgaaccccagaccttgcatatattatgcatt 27152379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 2257032 - 2256997
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||| ||||||||||||||||||||||||    
T  2257032 gggttcgaaccccagaccttgcatatattatgcatt 2256997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 3503035 - 3503000
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||| ||||||||||||||||||||||||||    
T  3503035 gggttcgaatctcagaccttgcatatattatgcatt 3503000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 10724000 - 10723965
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||| ||||||||||||||||||||||||||||||    
T  10724000 gggtttgaacctcagaccttgcatatattatgcatt 10723965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 12413554 - 12413519
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||| ||||||||||||||||||||||||||||||    
T  12413554 gggtttgaacctcagaccttgcatatattatgcatt 12413519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 12425614 - 12425579
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||| ||||||||||||||||||||||||||||||    
T  12425614 gggtttgaacctcagaccttgcatatattatgcatt 12425579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 42475110 - 42475145
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||||||||||||||||||||| |||||||||    
T  42475110 gggttcgaacctcagaccttgcatattttatgcatt 42475145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 43117190 - 43117225
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||| ||||||||||||||||||||||||||||||    
T  43117190 gggtttgaacctcagaccttgcatatattatgcatt 43117225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 43356542 - 43356577
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||| ||||||||||||||||||||||    
T  43356542 gggttcgaacctcggaccttgcatatattatgcatt 43356577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 19549496 - 19549462
Alignment:
Q  186 ggttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||| ||||||||||||||||||||||||||    
T  19549496 ggttcgaatctcagaccttgcatatattatgcatt 19549462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 40096890 - 40096857
Alignment:
Q  187 gttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||||| ||||||||||||||||||    
T  40096890 gttcgaacctcagactttgcatatattatgcatt 40096857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 6579284 - 6579316
Alignment:
Q  188 ttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||| ||||||||||||||||||||||||    
T  6579284 ttcgaaccccagaccttgcatatattatgcatt 6579316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 12599853 - 12599896
Alignment:
Q  175 ttgtggtggt--gggttcgaacctcagaccttgcatatattatg 216  Q
    ||||||||||  ||||||||||| ||||||||||||||||||||    
T  12599853 ttgtggtggtcggggttcgaaccccagaccttgcatatattatg 12599896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 20239401 - 20239369
Alignment:
Q  188 ttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||| |||||||||||||||||||||||    
T  20239401 ttcgaaccttagaccttgcatatattatgcatt 20239369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 25048838 - 25048866
Alignment:
Q  185 gggttcgaacctcagaccttgcatatatt 213  Q
    |||||||||||||||||||||||||||||    
T  25048838 gggttcgaacctcagaccttgcatatatt 25048866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 35757434 - 35757402
Alignment:
Q  186 ggttcgaacctcagaccttgcatatattatgca 218  Q
    |||||||||||||||| ||||||||||||||||    
T  35757434 ggttcgaacctcagactttgcatatattatgca 35757402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 41778947 - 41778979
Alignment:
Q  188 ttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||||| ||||||||||||||||||||||    
T  41778947 ttcgaacctcggaccttgcatatattatgcatt 41778979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 29251815 - 29251780
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  29251815 gggttcgaacctcagaccttgcatatattatgcatt 29251780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 17221520 - 17221555
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||| ||||||||||||||||||||||    
T  17221520 gggttcgaacctcggaccttgcatatattatgcatt 17221555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 22335419 - 22335384
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||| ||||||||||||||||||||||||||||||    
T  22335419 gggtttgaacctcagaccttgcatatattatgcatt 22335384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 28039860 - 28039895
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||| |||||||||||||||||||||||||||||    
T  28039860 gggttcaaacctcagaccttgcatatattatgcatt 28039895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 30561784 - 30561749
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||||||| |||||||||||||||||||||||    
T  30561784 gggttcgaaccttagaccttgcatatattatgcatt 30561749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 33020043 - 33020078
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||| ||||||||||||||||||||||||||||||    
T  33020043 gggtttgaacctcagaccttgcatatattatgcatt 33020078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 5280704 - 5280659
Alignment:
Q  175 ttgtggtggt--gggttcgaacctcagaccttgcatatattatgca 218  Q
    ||||||||||  ||||||||||| ||||||||||||||||||||||    
T  5280704 ttgtggtggtcggggttcgaaccccagaccttgcatatattatgca 5280659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 10132445 - 10132479
Alignment:
Q  186 ggttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||||| ||||||||||||||||||||||||    
T  10132445 ggttcgaaccccagaccttgcatatattatgcatt 10132479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 13054933 - 13054899
Alignment:
Q  186 ggttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||||||| ||||||||||||||||||||||    
T  13054933 ggttcgaacctccgaccttgcatatattatgcatt 13054899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 41362679 - 41362645
Alignment:
Q  186 ggttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||||||| ||||||||||||||||||||||    
T  41362679 ggttcgaacctccgaccttgcatatattatgcatt 41362645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 215
Target Start/End: Original strand, 41950084 - 41950114
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattat 215  Q
    |||||||||||||||||||||||||||||||    
T  41950084 gggttcgaacctcagaccttgcatatattat 41950114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 2665290 - 2665338
Alignment:
Q  175 ttgtggtggt--gggttcgaacctcagaccttgcata-tattatgcatt 220  Q
    ||||||||||  ||||||||||||||||||||||||| |||||||||||    
T  2665290 ttgtggtggttggggttcgaacctcagaccttgcatattattatgcatt 2665338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 220
Target Start/End: Complemental strand, 14880883 - 14880854
Alignment:
Q  191 gaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||||||||||||||||||||    
T  14880883 gaacctcagaccttgcatatattatgcatt 14880854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 220
Target Start/End: Original strand, 28832177 - 28832206
Alignment:
Q  191 gaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||||||||||||||||||||    
T  28832177 gaacctcagaccttgcatatattatgcatt 28832206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 218
Target Start/End: Original strand, 35778201 - 35778234
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgca 218  Q
    ||||||||||||||||||||||||||||| ||||    
T  35778201 gggttcgaacctcagaccttgcatatattgtgca 35778234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 218
Target Start/End: Original strand, 46335059 - 46335092
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgca 218  Q
    ||||| ||||||||||||||||||||||||||||    
T  46335059 gggtttgaacctcagaccttgcatatattatgca 46335092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 5033603 - 5033571
Alignment:
Q  186 ggttcgaacctcagaccttgcatatattatgca 218  Q
    |||||||||| ||||||||||||||||||||||    
T  5033603 ggttcgaaccccagaccttgcatatattatgca 5033571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 10356705 - 10356749
Alignment:
Q  177 gtggtggt-gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||||    
T  10356705 gtggtggtcgggtttgaaccccagaccttgcatatattatgcatt 10356749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 29233962 - 29234009
Alignment:
Q  175 ttgtggtggt--gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||  ||||||||||| |||||||||||||| |||||||||    
T  29233962 ttgtggtggttggggttcgaaccccagaccttgcatattttatgcatt 29234009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 29987100 - 29987147
Alignment:
Q  175 ttgtggtggt--gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||  ||||||||||  ||||||||||||||||||||||||    
T  29987100 ttgtggtggttggggttcgaactccagaccttgcatatattatgcatt 29987147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 42074162 - 42074129
Alignment:
Q  187 gttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||||||||||||||||||||||||    
T  42074162 gttcgaacctcagaccttgcatatattatgcatt 42074129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 8139773 - 8139741
Alignment:
Q  188 ttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||||||||||||||||||||||||||||    
T  8139773 ttcgaacctcagaccttgcatatattatgcatt 8139741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 14771389 - 14771357
Alignment:
Q  188 ttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||||||||||||||||||||||||||||    
T  14771389 ttcgaacctcagaccttgcatatattatgcatt 14771357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 8075846 - 8075811
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||| ||||||||||||||||||||||||||||||    
T  8075846 gggtttgaacctcagaccttgcatatattatgcatt 8075811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 13829077 - 13829112
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||| ||||||||||||||||||||||||    
T  13829077 gggttcgaaccccagaccttgcatatattatgcatt 13829112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 25505701 - 25505736
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||| ||||||||||||||||||||||||    
T  25505701 gggttcgaaccccagaccttgcatatattatgcatt 25505736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 30200887 - 30200852
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||||||||| |||||||||||||||||||||    
T  30200887 gggttcgaacctcaaaccttgcatatattatgcatt 30200852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 35191817 - 35191852
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||| ||||||||||||||||||||||||    
T  35191817 gggttcgaaccccagaccttgcatatattatgcatt 35191852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 45096087 - 45096052
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||| ||||||||||||||||||||||||    
T  45096087 gggttcgaaccacagaccttgcatatattatgcatt 45096052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 46253897 - 46253932
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||||||||||||||||| ||||||||    
T  46253897 gggttcgaacctcagaccttgcatatactatgcatt 46253932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 53208031 - 53207996
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||| ||||||||||||||||||||||||    
T  53208031 gggttcgaaccccagaccttgcatatattatgcatt 53207996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 5702179 - 5702213
Alignment:
Q  186 ggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||| |||||||||||||||||||||    
T  5702179 ggttcgaacctcaaaccttgcatatattatgcatt 5702213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 220
Target Start/End: Original strand, 28430571 - 28430600
Alignment:
Q  191 gaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||||||||||||||||||||    
T  28430571 gaacctcagaccttgcatatattatgcatt 28430600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 218
Target Start/End: Original strand, 45885477 - 45885510
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgca 218  Q
    ||||| ||||||||||||||||||||||||||||    
T  45885477 gggtttgaacctcagaccttgcatatattatgca 45885510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 4760165 - 4760133
Alignment:
Q  188 ttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||| ||||||||||||||||||||||||||    
T  4760165 ttcgaatctcagaccttgcatatattatgcatt 4760133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 15507274 - 15507306
Alignment:
Q  188 ttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||||||| |||||||||||||||    
T  15507274 ttcgaacctcagaccttacatatattatgcatt 15507306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 53996357 - 53996325
Alignment:
Q  188 ttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||| ||||||||||||||||||||||||    
T  53996357 ttcgaaccccagaccttgcatatattatgcatt 53996325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 5255 - 5208
Alignment:
Q  175 ttgtggtggt--gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||||||    
T  5255 ttgtggtggttggggtttgaacctcagaccttgcatatattatgcatt 5208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 6768710 - 6768742
Alignment:
Q  188 ttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||||||||||||||||||||||||||||    
T  6768710 ttcgaacctcagaccttgcatatattatgcatt 6768742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 7872747 - 7872783
Alignment:
Q  184 tgggttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||||||| ||||||||||||||||||||||||    
T  7872747 tgggttcgaaccccagaccttgcatatattatgcatt 7872783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 6384912 - 6384877
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||| ||||||||||||||||||||||||    
T  6384912 gggttcgaaccccagaccttgcatatattatgcatt 6384877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 25923452 - 25923417
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||| |||||||||||||||||||||||||||||    
T  25923452 gggttcaaacctcagaccttgcatatattatgcatt 25923417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 26009335 - 26009302
Alignment:
Q  187 gttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||| ||||||||||||||||||||||||    
T  26009335 gttcgaaccccagaccttgcatatattatgcatt 26009302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 1399235 - 1399188
Alignment:
Q  175 ttgtggtggt--gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||  ||||||||| |||||||||||||||||| |||||||    
T  1399235 ttgtggtggttagggttcgaatctcagaccttgcatatatcatgcatt 1399188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 21105676 - 21105629
Alignment:
Q  175 ttgtggtggt--gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||  |||||||||||||  |||||||||||||||||||||    
T  21105676 ttgtggtggtcggggttcgaacctcgaaccttgcatatattatgcatt 21105629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 220
Target Start/End: Original strand, 44558781 - 44558809
Alignment:
Q  192 aacctcagaccttgcatatattatgcatt 220  Q
    |||||||||||||||||||||||||||||    
T  44558781 aacctcagaccttgcatatattatgcatt 44558809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 30639429 - 30639461
Alignment:
Q  188 ttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||||||||||||||||||||||||||||    
T  30639429 ttcgaacctcagaccttgcatatattatgcatt 30639461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 12808930 - 12808895
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||| ||||||||||||||||||||||||    
T  12808930 gggttcgaaccccagaccttgcatatattatgcatt 12808895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 1918460 - 1918493
Alignment:
Q  187 gttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||| ||||||||||||||||||||||    
T  1918460 gttcgaacctcggaccttgcatatattatgcatt 1918493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 220
Target Start/End: Original strand, 14049890 - 14049919
Alignment:
Q  191 gaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||||||||||||||||||||    
T  14049890 gaacctcagaccttgcatatattatgcatt 14049919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 220
Target Start/End: Original strand, 17113466 - 17113495
Alignment:
Q  191 gaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||||||||||||||||||||    
T  17113466 gaacctcagaccttgcatatattatgcatt 17113495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 220
Target Start/End: Complemental strand, 34701202 - 34701173
Alignment:
Q  191 gaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||||||||||||||||||||    
T  34701202 gaacctcagaccttgcatatattatgcatt 34701173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 9977130 - 9977083
Alignment:
Q  175 ttgtggtggt--gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||  ||||| ||||| ||||||||||||||||||||||||    
T  9977130 ttgtggtggtcagggtttgaaccccagaccttgcatatattatgcatt 9977083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 10778898 - 10778866
Alignment:
Q  188 ttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||||||| |||||||||||||||    
T  10778898 ttcgaacctcagaccttacatatattatgcatt 10778866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 15187136 - 15187089
Alignment:
Q  175 ttgtggtggt--gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||  ||||| ||||||| ||||||||||||||||||||||    
T  15187136 ttgtggtggtcggggtttgaacctcggaccttgcatatattatgcatt 15187089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 15473470 - 15473517
Alignment:
Q  175 ttgtggtggt--gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||  ||||| ||||||| ||||||||||||||||||||||    
T  15473470 ttgtggtggtcggggtttgaacctcggaccttgcatatattatgcatt 15473517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 11017234 - 11017202
Alignment:
Q  188 ttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||||||||||||||||||||||||||||    
T  11017234 ttcgaacctcagaccttgcatatattatgcatt 11017202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 216
Target Start/End: Complemental strand, 3222792 - 3222761
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatg 216  Q
    ||||||||||||||||||||||||||||||||    
T  3222792 gggttcgaacctcagaccttgcatatattatg 3222761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 5107245 - 5107280
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||| ||||||||||||||||||||||    
T  5107245 gggttcgaacctcggaccttgcatatattatgcatt 5107280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 17144539 - 17144505
Alignment:
Q  186 ggttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||| ||||||||||||||||||||||||||    
T  17144539 ggttcgaatctcagaccttgcatatattatgcatt 17144505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 31708147 - 31708181
Alignment:
Q  186 ggttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||||| ||||||||||||||||||||||||    
T  31708147 ggttcgaaccccagaccttgcatatattatgcatt 31708181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 37614329 - 37614375
Alignment:
Q  175 ttgtggtgg-tgggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||| |||||||||| | ||||||||||||||||||||||||    
T  37614329 ttgtggtggctgggttcgaatcccagaccttgcatatattatgcatt 37614375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 37791066 - 37791112
Alignment:
Q  175 ttgtggtggt-gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||||||| ||||||||| | ||||||||||||||||||||||||    
T  37791066 ttgtggtggttgggttcgaatcccagaccttgcatatattatgcatt 37791112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 220
Target Start/End: Original strand, 5974231 - 5974260
Alignment:
Q  191 gaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||||||||||||||||||||    
T  5974231 gaacctcagaccttgcatatattatgcatt 5974260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 186 - 219
Target Start/End: Original strand, 17465396 - 17465429
Alignment:
Q  186 ggttcgaacctcagaccttgcatatattatgcat 219  Q
    |||||||||| |||||||||||||||||||||||    
T  17465396 ggttcgaaccccagaccttgcatatattatgcat 17465429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 25607060 - 25607093
Alignment:
Q  187 gttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||| ||||||||||||||||||||||||    
T  25607060 gttcgaaccccagaccttgcatatattatgcatt 25607093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 218
Target Start/End: Original strand, 35807741 - 35807774
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgca 218  Q
    |||||||||||||| |||||||||||||||||||    
T  35807741 gggttcgaacctcaaaccttgcatatattatgca 35807774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 220
Target Start/End: Complemental strand, 40446038 - 40446009
Alignment:
Q  191 gaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||||||||||||||||||||    
T  40446038 gaacctcagaccttgcatatattatgcatt 40446009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 220
Target Start/End: Original strand, 8210162 - 8210190
Alignment:
Q  192 aacctcagaccttgcatatattatgcatt 220  Q
    |||||||||||||||||||||||||||||    
T  8210162 aacctcagaccttgcatatattatgcatt 8210190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 30623354 - 30623319
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||| ||||||||||||||||||||||||    
T  30623354 gggttcgaaccccagaccttgcatatattatgcatt 30623319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 38763515 - 38763550
Alignment:
Q  185 gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||| ||||||||||||||||||||||||    
T  38763515 gggttcgaaccccagaccttgcatatattatgcatt 38763550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 216
Target Start/End: Original strand, 13032363 - 13032393
Alignment:
Q  186 ggttcgaacctcagaccttgcatatattatg 216  Q
    |||||||||||||||||||||||||||||||    
T  13032363 ggttcgaacctcagaccttgcatatattatg 13032393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 220
Target Start/End: Original strand, 8442493 - 8442522
Alignment:
Q  191 gaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||||||||||||||||||||    
T  8442493 gaacctcagaccttgcatatattatgcatt 8442522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 27050816 - 27050769
Alignment:
Q  175 ttgtggtggt--gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||  |||||||||||||| ||||||||||| |||||||||    
T  27050816 ttgtggtggtcagggttcgaacctcataccttgcatattttatgcatt 27050769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 32944828 - 32944875
Alignment:
Q  175 ttgtggtggt--gggttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||  ||||| |||||||||||||||||||| |||||||||    
T  32944828 ttgtggtggtcggggtttgaacctcagaccttgcatattttatgcatt 32944875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 39821946 - 39821910
Alignment:
Q  184 tgggttcgaacctcagaccttgcatatattatgcatt 220  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  39821946 tgggtttgaaccccagaccttgcatatattatgcatt 39821910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 45396622 - 45396590
Alignment:
Q  188 ttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||| |||||||||||||||||||||||||    
T  45396622 ttcgaacttcagaccttgcatatattatgcatt 45396590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 119201 - 119233
Alignment:
Q  188 ttcgaacctcagaccttgcatatattatgcatt 220  Q
    ||||||||||||||||| |||||||||||||||    
T  119201 ttcgaacctcagaccttacatatattatgcatt 119233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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