View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21406_low_46 (Length: 217)
Name: NF21406_low_46
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21406_low_46 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 54304272 - 54304056
Alignment:
| Q |
1 |
tccttaccagtccaaaccttccccctcccctgtggaacctcttccattttgtctattgtcattgatttggaaaaggatctattatttggactaaaa-aac |
99 |
Q |
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| T |
54304272 |
tccttaccagtccaaaccttccccctcccctgtggaacctcttccattttgtctattgtcattgatttggaaaagtatctattatttggactaaaagaac |
54304173 |
T |
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| Q |
100 |
caactaaggtaatattttctgcaacaatagctcctgctcccgttgctaagtactaagtagtatcctgcacttgttgccacatcagatattgaagcaatga |
199 |
Q |
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| T |
54304172 |
caactaaggtaatattttctgcaacaatagctcctgctcccgttgctaagtactaagtagtatcctgcacttgttgccacatcagatattgaagcaatga |
54304073 |
T |
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| Q |
200 |
cgggttttttcggcagca |
217 |
Q |
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||| ||||||||||||| |
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| T |
54304072 |
tggg-tttttcggcagca |
54304056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 45878693 - 45878780
Alignment:
| Q |
115 |
tttctgcaacaatagctcctgctcccgttgctaagtactaagtagtatcctgcacttgttgccacatcagatattgaagcaatgacgggtttttt |
209 |
Q |
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| T |
45878693 |
tttctgcaacaatagctcctgctcccattgccatgta-------gtatcctccacttgctgccacatcagacattgaagcaatgactggtttttt |
45878780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 47293483 - 47293438
Alignment:
| Q |
28 |
ccctgtggaacctcttccattttgtctattgtcattgatttggaaa |
73 |
Q |
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| T |
47293483 |
ccctgtgcaacctcttccatcttgtctatggtcattgatctggaaa |
47293438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 56208883 - 56208924
Alignment:
| Q |
104 |
taaggtaatattttctgcaacaatagctcctgctcccgttgc |
145 |
Q |
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| T |
56208883 |
taaggtaagattttctgcaacaataactcctgctcccattgc |
56208924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 45860212 - 45860264
Alignment:
| Q |
157 |
tagtatcctgcacttgttgccacatcagatattgaagcaatgacgggtttttt |
209 |
Q |
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| T |
45860212 |
tagtatcctccactagctgccacatcagacattgaagcaatgattggtttttt |
45860264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 35802756 - 35802809
Alignment:
| Q |
156 |
gtagtatcctgcacttgttgccacatcagatattgaagcaatgacgggtttttt |
209 |
Q |
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| T |
35802756 |
gtagtatcctgcacttgttgccgcatcagacattgaagcaatgacgggtttttt |
35802809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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