View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21406_low_7 (Length: 467)
Name: NF21406_low_7
Description: NF21406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21406_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 20 - 449
Target Start/End: Original strand, 3948581 - 3949012
Alignment:
| Q |
20 |
agacctacctcaatctcttgaaattatacttgtgaacaagaaaagggttgttcccttcaatttctgaacaatgcaaggagaacatgaaaagggttgtgtt |
119 |
Q |
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| T |
3948581 |
agacctacctcaatctcttgaaattctacttgtgaacaagaaaagggttgttcccttcaatttctgaacaatgcaaggagaacatgaaaagggttgtgtt |
3948680 |
T |
|
| Q |
120 |
tgcgaattgcttgaaattggatgaacattctctcgtgaata--gtgtttaatttgcaaataaacattctgaaatttgcataccaacatgtatcagcttca |
217 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3948681 |
tgcgaattgcttgaaattggatgaacattctctcgcgaatattgtgtttaatttgcaaataaacattctgaaatttgcataccaacatttatcagcttca |
3948780 |
T |
|
| Q |
218 |
gaacaggattttcataataagttcaatgattataacgttcacattgaatcttatcaagctatttatgtgtatccagggagcagtgttccaaagtggttcg |
317 |
Q |
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| T |
3948781 |
gaacaggattttcataataagttcaatgattataacgttcacattgaatcttatcaagctatttatgtgtatccagggagcagtgttccaaagtggttcg |
3948880 |
T |
|
| Q |
318 |
agtataagacaacaacggattttgtagtcatggatctatcttcttctacaccgcgttcccctttgctcggctttgtacttggtgggaactggttaattgt |
417 |
Q |
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| T |
3948881 |
tgtataagacaacaacggattttgtagtcatggatctatcttcttctacaccgcgttcccctttgctcggctttgtacttggtgggaactggttaattgt |
3948980 |
T |
|
| Q |
418 |
tggcatgttgaaatttaacatcatgatctgtg |
449 |
Q |
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| T |
3948981 |
tggcatgttgaaatttaacatcatgatctgtg |
3949012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 66 - 449
Target Start/End: Original strand, 3965642 - 3966039
Alignment:
| Q |
66 |
gttgttcccttcaatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaaattggatgaacattctctcgtgaatagtg-- |
163 |
Q |
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|||||||||||||||| ||||||||| ||||||||||| | | |||||||| || |||||||||||||||||||||||||||||||| | |||| || |
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| T |
3965642 |
gttgttcccttcaattcctgaacaattcaaggagaacaggtatagggttgtattcgcgaattgcttgaaattggatgaacattctcttgcaaatattgcg |
3965741 |
T |
|
| Q |
164 |
tttaatttgcaaataaacattctgaaatttgcataccaacatgtatcagcttcagaacaggattttcataataagttcaatgattataacgttcacattg |
263 |
Q |
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|||||| ||||||||||| | |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||| || |
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| T |
3965742 |
tttaatgcgcaaataaacaatatgaaatttgcatgccaacatgtatcagctttggaacatgattttcataataagttcaatgattataaggatcacaatg |
3965841 |
T |
|
| Q |
264 |
aatcttatcaagctatttatgtgtatccagggagcagtgttccaaagtggttcgagtataagacaacaacggattttgtagtcatggatctatcttcttc |
363 |
Q |
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| T |
3965842 |
attcttatcaagcaatttacgtgtatccaggaaacagcgttccagagtggtttgagtatatgacaacaacggattatgtagtcattgatctatcttcttc |
3965941 |
T |
|
| Q |
364 |
tacaccgcgttcccctttgctcggc------------tttgtacttggtgggaactggttaattgttggcatgttgaaatttaacatcatgatctgtg |
449 |
Q |
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|||| | ||||||||||||||||| |||||||||||||||||| |||||||||||| | ||| ||||||||||||| ||||||| |
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| T |
3965942 |
tacatcaagttcccctttgctcggcttcattttctgttttgtacttggtgggaaccggttaattgttgccccgttaaaatttaacatcactatctgtg |
3966039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 66 - 440
Target Start/End: Complemental strand, 4016671 - 4016286
Alignment:
| Q |
66 |
gttgttcccttcaatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaaattggatgaacattctctcgtgaata--gtg |
163 |
Q |
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|||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||| |||| ||| |
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| T |
4016671 |
gttgttcccttcaattgctgaacaattcaaggagaacaggaaaagggttgtgtttgcgaattgcttgaaattggacgagcattcactcgcaaatattgtg |
4016572 |
T |
|
| Q |
164 |
tttaatttgcaaataaacattctgaaatttgcataccaacatgtatcagcttcagaacaggattttcataataagttcaatgattataacgttcacattg |
263 |
Q |
| |
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|||||| |||||||||||| ||||||||||||||||||||||||||||| | | || ||||| ||||||||||| ||||||||| | || |
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| T |
4016571 |
tttaatgctcaaataaacattaccaaatttgcataccaacatgtatcagcttctagagatgaatttcacaataagttcaacaattataacg---aagatg |
4016475 |
T |
|
| Q |
264 |
aatcttatcaagctatttatgtgtatccagggagcagtgttccaaagtggttcgagtataagacaacaacggattttgtagtcatggatctatcttcttc |
363 |
Q |
| |
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| ||| ||||||| |||||||||||||||||||| |||||||| | ||||| || ||||||||||||||||||| ||||| ||| |||||| ||||||| |
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| T |
4016474 |
attctcatcaagcactttatgtgtatccagggagctgtgttccagattggtttgaatataagacaacaacggattatgtagccattgatctaccttcttc |
4016375 |
T |
|
| Q |
364 |
tacaccgcgttcccctttgctcggc------------tttgtacttggtgggaactggttaattgttggcatgttgaaatttaacatca |
440 |
Q |
| |
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|||| ||| ||||| ||| |||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
4016374 |
tacatcgcattcccgtttcctcggctacattttctgttttgtacttggtgggaaccggttaattgttgacatgttgaaatttaacatca |
4016286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 64 - 211
Target Start/End: Complemental strand, 3804320 - 3804171
Alignment:
| Q |
64 |
gggttgttcccttcaatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaaattggatgaacattctctcgtgaata--g |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| | ||||| | |
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| T |
3804320 |
gggttgttcccttcaatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttaaaattggatgaataatctccctcgaatactg |
3804221 |
T |
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| Q |
162 |
tgtttaatttgcaaataaacattctgaaatttgcataccaacatgtatca |
211 |
Q |
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| T |
3804220 |
tatttaatgcgcaaagaaacattctgaaatttgcataccaacatgtatca |
3804171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 315
Target Start/End: Complemental strand, 3804173 - 3804113
Alignment:
| Q |
256 |
tcacattgaatcttatcaagctatttatgtgtatcc-agggagcagtgttccaaagtggtt |
315 |
Q |
| |
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||||||||| |||||||||||| ||||||||||||| | |||||||||||||||||||||| |
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| T |
3804173 |
tcacattgactcttatcaagctctttatgtgtatccaacggagcagtgttccaaagtggtt |
3804113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 4000467 - 4000384
Alignment:
| Q |
77 |
caatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaaattggatgaacattctctcgtgaata |
160 |
Q |
| |
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||||||||||||||| |||||| |||| ||||||| ||| ||| ||||||||| || |||||||||||||||||||| |||| |
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| T |
4000467 |
caatttctgaacaattcaaggaaaacaagaaaaggattgagttctggaattgcttcaacttggatgaacattctctcgtaaata |
4000384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 337
Target Start/End: Original strand, 3922040 - 3922116
Alignment:
| Q |
261 |
ttgaatcttatcaagctatttatgtgtatccagggagcagtgttccaaagtggttcgagtataagacaacaacggat |
337 |
Q |
| |
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|||| ||||||||||| | ||||||||||| || || ||||||||||||||||| ||||| |||||||||| |||| |
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| T |
3922040 |
ttgattcttatcaagcagtgtatgtgtatcctggaagtagtgttccaaagtggttggagtacaagacaacaatggat |
3922116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 153
Target Start/End: Complemental strand, 4023396 - 4023307
Alignment:
| Q |
67 |
ttgttcccttcaa---tttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaaattggatgaacattctctc |
153 |
Q |
| |
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||||||||||||| |||||||||||| |||||| |||| ||||||| ||| ||| |||||||| ||| |||||||||||||||||| |
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| T |
4023396 |
ttgttcccttcaacagtttctgaacaattcaaggaaaacaagaaaaggattgagttctggaattgctggaacttggatgaacattctctc |
4023307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 3921838 - 3921926
Alignment:
| Q |
67 |
ttgttcccttcaa---tttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaaattggatgaacattctct |
152 |
Q |
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||||||||||||| || ||||||||| |||||| |||| ||||||||||| ||| ||||||||| || |||||||||| |||||| |
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| T |
3921838 |
ttgttcccttcaacagttgctgaacaattcaaggaaaacaagaaaagggttgagttctggaattgcttcaacttggatgaactttctct |
3921926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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