View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21407_high_3 (Length: 390)
Name: NF21407_high_3
Description: NF21407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21407_high_3 |
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| [»] scaffold0204 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 36 - 383
Target Start/End: Complemental strand, 41414299 - 41413953
Alignment:
| Q |
36 |
ttatattcatacatgaagtagtctaatgcagtaatgcttgaaactgaacaaaaatttagggcaacttattttgtttcatttttcgcatgagcaggttata |
135 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41414299 |
ttatgttcatacatgaagtagtctaatgcagtaatgcttgaaactgaacaaaaatttagggcaacttattttgtttcattttt-gcatgagcaggttata |
41414201 |
T |
|
| Q |
136 |
gttgcaataattcttggagtcaagtttggggataaccaggaactatccaaaggctattcaatattggttgtagttgtggtttgcctatttgttgtagcgt |
235 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41414200 |
gttgcaataattcttggagtcaagtttggggataaccaggaactatccaaaggctattcaatattggttgtagttgtggtttgcctatttgttgtagcgt |
41414101 |
T |
|
| Q |
236 |
tcggatggtcatggggtcctcttggttggacaattccaagtgagatatttccattagaaatccgttctgcagggcaaagtatcacagtatttgtaaacct |
335 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41414100 |
tcggatggtcatggggtcctcttggttggacaattccaagtgagatatttccattagaaatccgttcagcagggcaaagtatcacagtatttgtaaacct |
41414001 |
T |
|
| Q |
336 |
tttcttcactttcataattgctcaagtatttcttgctcttctctgctc |
383 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41414000 |
ttttttcactttcataattgctcaagtatttcttgctcttctctgctc |
41413953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 41 - 383
Target Start/End: Complemental strand, 36293823 - 36293480
Alignment:
| Q |
41 |
ttcatacatgaagtagtctaatgcagtaatgcttgaaactgaacaaaaattt-agggcaacttattttgtttcatttttcgcatgagcaggttatagttg |
139 |
Q |
| |
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|||||||||||| |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
36293823 |
ttcatacatgaattagtctaatgcagtaatgctagaagctgaacaaaaattgcagggcaacttattttgtttcatttttcacatgagcaggttatagttg |
36293724 |
T |
|
| Q |
140 |
caataattcttggagtcaagtttggggataaccaggaactatccaaaggctattcaatattggttgtagttgtggtttgcctatttgttgtagcgttcgg |
239 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
36293723 |
caataattcttggggtgaagtttggggataaccaagaactgtcgaaaggctattcaatattggttgtagttgtggtttgcctatttgttgtagcatttgg |
36293624 |
T |
|
| Q |
240 |
atggtcatggggtcctcttggttggacaattccaagtgagatatttccattagaaatccgttctgcagggcaaagtatcacagtatttgtaaaccttttc |
339 |
Q |
| |
|
|||||| ||||| || |||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| |
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| T |
36293623 |
atggtcgtggggcccacttggttggacagttccaagtgagatatttccattagaaatccgttcagcagggcagagtatcacagtatctgtaaaccttttt |
36293524 |
T |
|
| Q |
340 |
ttcactttcataattgctcaagtatttcttgctcttctctgctc |
383 |
Q |
| |
|
||||||||| |||||||||| | ||| ||||||||||||||||| |
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|
| T |
36293523 |
ttcactttcgtaattgctcaggcattccttgctcttctctgctc |
36293480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 112 - 350
Target Start/End: Original strand, 48345262 - 48345500
Alignment:
| Q |
112 |
catttttcgcatgagcaggttatagttgcaataattcttggagtcaagtttggggataaccaggaactatccaaaggctattcaatattggttgtagttg |
211 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |||||| | || |||||| |||| ||||| ||| | || ||| ||||||||||| ||||||||||| |
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| T |
48345262 |
catttttcacatgaacaggttatagttgccataattttgggtgtcaagcttggaccaaaccaagaattgtcaaaaaactattcaatatcggttgtagttg |
48345361 |
T |
|
| Q |
212 |
tggtttgcctatttgttgtagcgttcggatggtcatggggtcctcttggttggacaattccaagtgagatatttccattagaaatccgttctgcagggca |
311 |
Q |
| |
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| ||| ||||||||| |||| || |||||||||||||| || ||||| |||||| | ||||||||||||||||||||||||||||| || |||||||| |
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| T |
48345362 |
tactttctctatttgttctagcttttggatggtcatgggggccacttggatggacagtcccaagtgagatatttccattagaaatccgatcggcagggca |
48345461 |
T |
|
| Q |
312 |
aagtatcacagtatttgtaaaccttttcttcactttcat |
350 |
Q |
| |
|
|||||||||||| ||||||||| | ||||||||||| |
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|
| T |
48345462 |
aagtatcacagttgcagtaaaccttctgttcactttcat |
48345500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 111 - 356
Target Start/End: Original strand, 48332666 - 48332911
Alignment:
| Q |
111 |
tcatttttcgcatgagcaggttatagttgcaataattcttggagtcaagtttggggataaccaggaactatccaaaggctattcaatattggttgtagtt |
210 |
Q |
| |
|
||||||||| ||||| |||||| || ||| |||||||| || |||| ||||| || ||||| ||| | || ||| |||||||||||| ||||||| | |
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| T |
48332666 |
tcatttttcacatgaacaggtttcagctgccataattctggggatcaaatttggagaaaaccaagaattgtcaaaaagctattcaatatcggttgtaata |
48332765 |
T |
|
| Q |
211 |
gtggtttgcctatttgttgtagcgttcggatggtcatggggtcctcttggttggacaattccaagtgagatatttccattagaaatccgttctgcagggc |
310 |
Q |
| |
|
| | | ||||||||| |||| || |||||||||||||| || || || |||||| | ||||||||||||||||| ||||||||||| || ||||||| |
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|
| T |
48332766 |
atactctctctatttgttctagcatttggatggtcatgggggccactaggatggacagtcccaagtgagatatttccgttagaaatccgatcggcagggc |
48332865 |
T |
|
| Q |
311 |
aaagtatcacagtatttgtaaaccttttcttcactttcataattgc |
356 |
Q |
| |
|
||||||| ||||| ||| |||||| ||||||||||||||||||| |
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| T |
48332866 |
aaagtataacagttgctgtgaaccttctcttcactttcataattgc |
48332911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 113 - 353
Target Start/End: Original strand, 8040 - 8280
Alignment:
| Q |
113 |
atttttcgcatgagcaggttatagttgcaataattcttggag-tcaagtttggggataaccaggaactatccaaaggctattcaatattggttgtagttg |
211 |
Q |
| |
|
||||||| ||||||||||| |||||||| ||||| ||||| | |||||||||| || ||||| ||| | || |||||||||||| | | || ||||||| |
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|
| T |
8040 |
atttttcacatgagcaggtcatagttgccataat-cttggggatcaagtttggagacaaccaagaattgtcaaaaggctattcattgtcagtagtagttg |
8138 |
T |
|
| Q |
212 |
tggtttgcctatttgttgtagcgttcggatggtcatggggtcctcttggttggacaattccaagtgagatatttccattagaaatccgttctgcagggca |
311 |
Q |
| |
|
|||| ||||||||| |||| || |||||||||||||| || || || |||||| | ||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
8139 |
caatttgtctatttgttctagcatttggatggtcatgggggccactagggtggacagtcccaagtgagatatttccattagaaatccgatcagcagggca |
8238 |
T |
|
| Q |
312 |
aagtatcacagtatttgtaaaccttttcttcactttcataat |
353 |
Q |
| |
|
||||| ||||| |||||||||| | |||||||||||||| |
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|
| T |
8239 |
gagtataacagttgctgtaaaccttcttttcactttcataat |
8280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 111 - 356
Target Start/End: Original strand, 20188 - 20433
Alignment:
| Q |
111 |
tcatttttcgcatgagcaggttatagttgcaataattcttggagtcaagtttggggataaccaggaactatccaaaggctattcaatattggttgtagtt |
210 |
Q |
| |
|
||||||||| ||||| |||||| || ||| |||||||| || |||| ||||| || ||||| ||| | || ||| |||||||||||| ||||||| | |
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|
| T |
20188 |
tcatttttcacatgaacaggtttcagctgccataattctggggatcaaatttggagaaaaccaagaattgtcaaaaagctattcaatatcggttgtaata |
20287 |
T |
|
| Q |
211 |
gtggtttgcctatttgttgtagcgttcggatggtcatggggtcctcttggttggacaattccaagtgagatatttccattagaaatccgttctgcagggc |
310 |
Q |
| |
|
| | | ||||||||| |||| || |||||||||||||| || || || |||||| | ||||||||||||||||| ||||||||||| || ||||||| |
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|
| T |
20288 |
atactctctctatttgttctagcatttggatggtcatgggggccactaggatggacagtcccaagtgagatatttccgttagaaatccgatcggcagggc |
20387 |
T |
|
| Q |
311 |
aaagtatcacagtatttgtaaaccttttcttcactttcataattgc |
356 |
Q |
| |
|
||||||| ||||| ||| |||||| ||||||||||||||||||| |
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|
| T |
20388 |
aaagtataacagttgctgtgaaccttctcttcactttcataattgc |
20433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 47212628 - 47212703
Alignment:
| Q |
240 |
atggtcatggggtcctcttggttggacaattccaagtgagatatttccattagaaatccgttctgcagggcaaagt |
315 |
Q |
| |
|
||||||||||||||| |||| |||| ||||||||||||||||||||| |||| | ||||||||||| |||||| |
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|
| T |
47212628 |
atggtcatggggtccacttgcttggcttattccaagtgagatatttccactagagactcgttctgcaggacaaagt |
47212703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 47185943 - 47186047
Alignment:
| Q |
183 |
caaaggctattcaatattggttgtagttgtggtttgcctatttgttgtagcgttcggatggtcatggggtcctcttggttggacaattccaagtgagata |
282 |
Q |
| |
|
|||||||||| |||| ||||| || ||| |||| ||| |||||||| | | || | ||||||||||||||| ||||||||| |||||| ||||||| | |
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| T |
47185943 |
caaaggctatgcaatgttggtggtggttatggtatgcacatttgttgcatcttttgcatggtcatggggtccacttggttggttaattcctagtgagaca |
47186042 |
T |
|
| Q |
283 |
tttcc |
287 |
Q |
| |
|
||||| |
|
|
| T |
47186043 |
tttcc |
47186047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 47198482 - 47198586
Alignment:
| Q |
183 |
caaaggctattcaatattggttgtagttgtggtttgcctatttgttgtagcgttcggatggtcatggggtcctcttggttggacaattccaagtgagata |
282 |
Q |
| |
|
|||||||||| |||| ||||| || ||| |||| ||| |||||||| | | || | ||||||||||||||| ||||||||| |||||| ||||||| | |
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|
| T |
47198482 |
caaaggctatgcaatgttggtggtggttatggtatgcacatttgttgcatcttttgcatggtcatggggtccacttggttggttaattcctagtgagaca |
47198581 |
T |
|
| Q |
283 |
tttcc |
287 |
Q |
| |
|
||||| |
|
|
| T |
47198582 |
tttcc |
47198586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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