View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21407_high_4 (Length: 345)
Name: NF21407_high_4
Description: NF21407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21407_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 157 - 329
Target Start/End: Complemental strand, 6126813 - 6126640
Alignment:
| Q |
157 |
ggatgcaacggtagagagagaggcttgcaagtgagcggcggctgtttcatctcactaagcaatagcagttaataacattagggttacattaaaagtgata |
256 |
Q |
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| T |
6126813 |
ggatgcaacggtagagagagaggcttgcaagtgagcggcggctgtttcatctcactaagcaatagcagttaataacattagggttacattaaaagtgata |
6126714 |
T |
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| Q |
257 |
ttgagccacatgtagaaacgtgggtttgggccaaacatatatat-ttaagttaatattgtacccaaacattatt |
329 |
Q |
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| T |
6126713 |
ttgagccacatgtagaaacgtgggtttgggccaaacatatatatcttaagttaatattgtacccaaacattatt |
6126640 |
T |
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Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 6126961 - 6126884
Alignment:
| Q |
9 |
agcacagattgagaaatattcaaccaagattgctagaagaagaagaaataattggactgtatgattcgattcaagaag |
86 |
Q |
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| T |
6126961 |
agcacagattgagaaatattcaaccaagattgctagaagaagaagaaataattggactgtatgattcgattcaagaag |
6126884 |
T |
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