View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21407_high_5 (Length: 237)
Name: NF21407_high_5
Description: NF21407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21407_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 52379192 - 52379423
Alignment:
| Q |
1 |
aagagtagcatgataaacttgacaatgtacacgactctccaaaaatagaaggtattctattattcttttgaaagcacctataaggggcctttatacttgc |
100 |
Q |
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| T |
52379192 |
aagagtagcatgataaacttgacaatgtacacgactctccaaaaatagaaggtattctattattcttttgaaagcacctataaggggcctttatacttgc |
52379291 |
T |
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| Q |
101 |
aatga-------------atctgataagtaatattaaattttcttggtttaatttaaaatgtaataaaactgataagaaaagaagaactaaattcatcat |
187 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52379292 |
aatgaaaaccatcttcttatctgataagtaatattaaattttcttggtttaatttaaaatgtaataaaactgataagaaaagaagaactaaat---tcat |
52379388 |
T |
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| Q |
188 |
atatgttgtagcaactacaaaatattagcacttgt |
222 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
52379389 |
atatgttgtagcaactacaaaatattagcacttgt |
52379423 |
T |
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