View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21408_high_18 (Length: 328)
Name: NF21408_high_18
Description: NF21408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21408_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 44799147 - 44798842
Alignment:
| Q |
9 |
agcagagaaaccaacatgcataaactctttaaatctctcagaaagatcaatgaatgaagcaataattggtgttggaggtctagttgaagagtaactaacc |
108 |
Q |
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| T |
44799147 |
agcagagaaaccaacatgcataaactctttaaatctctcagaaagatcaatgaatgaagcaataattggtgttggaggtctagttgaagagtaactaacc |
44799048 |
T |
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| Q |
109 |
caaacacgaaccattttcatatcatctctatactcaatccatgcattgatgattttcccacttttcaaatcaatccgacgtgaaagaagatcagcagaag |
208 |
Q |
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| T |
44799047 |
caaacacgaaccattttcatatcatctctatactcaatccatgcattgatgattttcccacttttcaaatcaatccgacgtgaaagaagatcagcagaag |
44798948 |
T |
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| Q |
209 |
caaaagaaacaacactgccaagatcaataccaacgtggtttccattaatgtcaccaagagaaggatcaaaacttgtatcaaattcaaccgcaaagtaaga |
308 |
Q |
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| T |
44798947 |
caaaagaaacaacactgccaagatcaataccaacgtggtttccattaatgtcaccaagagaaggatcaaaactcgtatcaaattcaaccgcaaagtaaga |
44798848 |
T |
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| Q |
309 |
atcttg |
314 |
Q |
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|||||| |
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| T |
44798847 |
atcttg |
44798842 |
T |
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