View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21408_high_19 (Length: 316)

Name: NF21408_high_19
Description: NF21408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21408_high_19
NF21408_high_19
[»] chr8 (13 HSPs)
chr8 (210-298)||(22786170-22786258)
chr8 (1-36)||(32258089-32258124)
chr8 (1-36)||(34472379-34472414)
chr8 (1-31)||(94469-94499)
chr8 (1-31)||(1632398-1632428)
chr8 (1-31)||(11875968-11875998)
chr8 (1-31)||(11890975-11891005)
chr8 (1-31)||(32719566-32719596)
chr8 (1-31)||(34413144-34413174)
chr8 (1-34)||(6511471-6511504)
chr8 (6-39)||(38826628-38826661)
chr8 (1-33)||(2626021-2626053)
chr8 (1-29)||(29716942-29716970)
[»] chr4 (17 HSPs)
chr4 (1-39)||(37868517-37868555)
chr4 (1-36)||(23778778-23778813)
chr4 (1-36)||(9761197-9761232)
chr4 (4-39)||(25175080-25175115)
chr4 (1-36)||(33325511-33325546)
chr4 (1-36)||(48825772-48825807)
chr4 (1-31)||(626940-626970)
chr4 (1-31)||(1457976-1458006)
chr4 (2-36)||(29505688-29505722)
chr4 (1-31)||(30057304-30057334)
chr4 (1-39)||(31187490-31187528)
chr4 (1-39)||(39697813-39697851)
chr4 (1-31)||(47890777-47890807)
chr4 (1-31)||(51791334-51791364)
chr4 (2-31)||(8965177-8965206)
chr4 (1-29)||(2074109-2074137)
chr4 (4-36)||(15064155-15064187)
[»] chr7 (9 HSPs)
chr7 (1-36)||(28501239-28501274)
chr7 (1-36)||(12615833-12615868)
chr7 (1-36)||(28424284-28424319)
chr7 (1-36)||(44616684-44616719)
chr7 (1-31)||(2527343-2527373)
chr7 (1-31)||(3766893-3766923)
chr7 (1-31)||(31112979-31113009)
chr7 (2-31)||(1563697-1563726)
chr7 (4-36)||(33996834-33996866)
[»] chr2 (15 HSPs)
chr2 (1-36)||(43936783-43936818)
chr2 (2-36)||(41298545-41298579)
chr2 (1-32)||(13606201-13606232)
chr2 (1-32)||(16040323-16040354)
chr2 (1-36)||(30392785-30392820)
chr2 (1-39)||(3439030-3439068)
chr2 (1-31)||(5112809-5112839)
chr2 (1-31)||(8250259-8250289)
chr2 (1-31)||(13773482-13773512)
chr2 (1-31)||(33041821-33041851)
chr2 (1-31)||(36182724-36182754)
chr2 (1-39)||(37486883-37486921)
chr2 (1-31)||(40688597-40688627)
chr2 (2-36)||(43398392-43398426)
chr2 (1-29)||(2806462-2806490)
[»] chr1 (14 HSPs)
chr1 (1-36)||(10478222-10478257)
chr1 (1-39)||(43667907-43667945)
chr1 (1-36)||(2754442-2754477)
chr1 (1-36)||(35283583-35283618)
chr1 (1-36)||(36726643-36726678)
chr1 (1-31)||(4553504-4553534)
chr1 (1-31)||(7961785-7961815)
chr1 (1-31)||(16526135-16526165)
chr1 (1-31)||(32589447-32589477)
chr1 (1-31)||(40375273-40375303)
chr1 (1-31)||(47930629-47930659)
chr1 (2-39)||(18216989-18217026)
chr1 (2-39)||(46867804-46867841)
chr1 (3-39)||(24333652-24333688)
[»] chr3 (12 HSPs)
chr3 (1-39)||(9220203-9220241)
chr3 (1-36)||(4860243-4860278)
chr3 (1-36)||(4880251-4880286)
chr3 (1-36)||(23164106-23164141)
chr3 (1-36)||(28195812-28195847)
chr3 (1-36)||(32256507-32256542)
chr3 (1-36)||(45512948-45512983)
chr3 (1-31)||(10349482-10349512)
chr3 (1-31)||(15975234-15975264)
chr3 (1-39)||(21405236-21405274)
chr3 (1-31)||(32429829-32429859)
chr3 (2-32)||(48546256-48546286)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-36)||(39728-39763)
[»] chr6 (3 HSPs)
chr6 (1-36)||(22574952-22574987)
chr6 (1-31)||(216288-216318)
chr6 (1-31)||(8297709-8297739)
[»] chr5 (15 HSPs)
chr5 (1-36)||(9069316-9069351)
chr5 (1-36)||(10758756-10758791)
chr5 (1-36)||(22931570-22931605)
chr5 (1-36)||(27498659-27498694)
chr5 (1-31)||(546884-546914)
chr5 (4-38)||(8282830-8282864)
chr5 (1-31)||(9688630-9688660)
chr5 (1-39)||(13876271-13876309)
chr5 (1-31)||(17967576-17967606)
chr5 (1-39)||(18026778-18026816)
chr5 (1-39)||(19891376-19891414)
chr5 (1-39)||(42367012-42367050)
chr5 (1-39)||(42525482-42525520)
chr5 (2-31)||(31581568-31581597)
chr5 (3-31)||(20719822-20719850)


Alignment Details
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 210 - 298
Target Start/End: Original strand, 22786170 - 22786258
Alignment:
Q  210 gagtatcaatggaacattcgttaacaagatcatcattatttttggtttcacaaaattgaatcatgtgtgtagttaaaatgttttggaat 298  Q
    |||||||||||  |||||| ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22786170 gagtatcaatgcgacattcattaaccagaccattattatttttggtttcacaaaattgaatcatgtgtgtagttaaaatgttttggaat 22786258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 32258089 - 32258124
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  32258089 cacaattaaattgtgtgagctctaaccactaaacta 32258124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 34472379 - 34472414
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  34472379 cacaattaaattgtgtgagctctaaccactagacta 34472414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 94499 - 94469
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  94499 cacaattaaattgtgtgagctctaaccacta 94469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 1632428 - 1632398
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  1632428 cacaattaaattgtgtgagctctaaccacta 1632398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 11875968 - 11875998
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  11875968 cacaattaaattgtgtgagctctaaccacta 11875998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 11890975 - 11891005
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  11890975 cacaattaaattgtgtgagctctaaccacta 11891005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 32719596 - 32719566
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  32719596 cacaattaaattgtgtgagctctaaccacta 32719566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 34413144 - 34413174
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  34413144 cacaattaaattgtgtgagctctaaccacta 34413174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 6511504 - 6511471
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaac 34  Q
    ||||||| ||||||||||||||||||||||||||    
T  6511504 cacaatttaattgtgtgagctctaaccactaaac 6511471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 38826661 - 38826628
Alignment:
Q  6 ttaaattgtgtgagctctaaccactaaactattt 39  Q
    |||||||||||||||||||||||| |||||||||    
T  38826661 ttaaattgtgtgagctctaaccaccaaactattt 38826628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2626053 - 2626021
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaa 33  Q
    |||||||||||||||||||||||| ||||||||    
T  2626053 cacaattaaattgtgtgagctctagccactaaa 2626021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 29716942 - 29716970
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccac 29  Q
    |||||||||||||||||||||||||||||    
T  29716942 cacaattaaattgtgtgagctctaaccac 29716970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 37868555 - 37868517
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaactattt 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37868555 cacaattaaattgtgtgagctctaaccactaaactattt 37868517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 23778813 - 23778778
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  23778813 cacaattaaattgtgtgagctctaaccactaaacta 23778778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9761197 - 9761232
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  9761197 cacaattaaattgtgtgagctctaaccactagacta 9761232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 25175115 - 25175080
Alignment:
Q  4 aattaaattgtgtgagctctaaccactaaactattt 39  Q
    |||||||||||||||||||||||||||| |||||||    
T  25175115 aattaaattgtgtgagctctaaccactagactattt 25175080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 33325511 - 33325546
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  33325511 cacaattaaattgtgtgagctctagccactaaacta 33325546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 48825807 - 48825772
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  48825807 cacaattaaattgtgtgagctctaaccactagacta 48825772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 626970 - 626940
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  626970 cacaattaaattgtgtgagctctaaccacta 626940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 1458006 - 1457976
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  1458006 cacaattaaattgtgtgagctctaaccacta 1457976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 29505722 - 29505688
Alignment:
Q  2 acaattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||||||||||||||||||| |||||||||||    
T  29505722 acaattaaattgtgtgagctctagccactaaacta 29505688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 30057304 - 30057334
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  30057304 cacaattaaattgtgtgagctctaaccacta 30057334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 31187528 - 31187490
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaactattt 39  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  31187528 cacatttaaaatgtgtgagctctaaccactaaactattt 31187490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 39697851 - 39697813
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaactattt 39  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  39697851 cacaattaaattgtgtgagctctaactactagactattt 39697813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 47890777 - 47890807
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  47890777 cacaattaaattgtgtgagctctaaccacta 47890807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 51791334 - 51791364
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  51791334 cacaattaaattgtgtgagctctaaccacta 51791364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 8965177 - 8965206
Alignment:
Q  2 acaattaaattgtgtgagctctaaccacta 31  Q
    ||||||||||||||||||||||||||||||    
T  8965177 acaattaaattgtgtgagctctaaccacta 8965206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 2074109 - 2074137
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccac 29  Q
    |||||||||||||||||||||||||||||    
T  2074109 cacaattaaattgtgtgagctctaaccac 2074137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 15064187 - 15064155
Alignment:
Q  4 aattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||||||||||||||||| |||||||||||    
T  15064187 aattaaattgtgtgagctctagccactaaacta 15064155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 28501239 - 28501274
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  28501239 cacaattaaattgtgtgagctctaaccactaaacta 28501274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 12615833 - 12615868
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  12615833 cacaattaaattgtgtgagctctaaccactagacta 12615868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 28424319 - 28424284
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  28424319 cacaattaaattgtgtgagctctaaccactagacta 28424284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 44616684 - 44616719
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  44616684 cacaattaaattgtgtgagctctaaccactagacta 44616719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 2527343 - 2527373
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  2527343 cacaattaaattgtgtgagctctaaccacta 2527373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 3766893 - 3766923
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  3766893 cacaattaaattgtgtgagctctaaccacta 3766923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 31112979 - 31113009
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  31112979 cacaattaaattgtgtgagctctaaccacta 31113009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 1563726 - 1563697
Alignment:
Q  2 acaattaaattgtgtgagctctaaccacta 31  Q
    ||||||||||||||||||||||||||||||    
T  1563726 acaattaaattgtgtgagctctaaccacta 1563697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 33996866 - 33996834
Alignment:
Q  4 aattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||||||||||||||||| |||||||||||    
T  33996866 aattaaattgtgtgagctctagccactaaacta 33996834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 43936783 - 43936818
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  43936783 cacaattaaattgtgtgagctctaaccactaaacta 43936818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 41298545 - 41298579
Alignment:
Q  2 acaattaaattgtgtgagctctaaccactaaacta 36  Q
    |||||||||||||||||||||||||||||||||||    
T  41298545 acaattaaattgtgtgagctctaaccactaaacta 41298579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 13606232 - 13606201
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  13606232 cacaattaaattgtgtgagctctaaccactaa 13606201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 16040323 - 16040354
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  16040323 cacaattaaattgtgtgagctctaaccactaa 16040354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 30392820 - 30392785
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  30392820 cacaattaaattgtgtgagctctaaccactagacta 30392785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 3439030 - 3439068
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaactattt 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  3439030 cacaattaaattgtgtgagctctagccactagactattt 3439068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 5112839 - 5112809
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  5112839 cacaattaaattgtgtgagctctaaccacta 5112809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 8250289 - 8250259
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  8250289 cacaattaaattgtgtgagctctaaccacta 8250259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 13773482 - 13773512
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  13773482 cacaattaaattgtgtgagctctaaccacta 13773512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 33041851 - 33041821
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  33041851 cacaattaaattgtgtgagctctaaccacta 33041821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 36182724 - 36182754
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  36182724 cacaattaaattgtgtgagctctaaccacta 36182754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 37486921 - 37486883
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaactattt 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  37486921 cacaattaaattgtgtgagctctagccactagactattt 37486883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 40688627 - 40688597
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  40688627 cacaattaaattgtgtgagctctaaccacta 40688597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 43398392 - 43398426
Alignment:
Q  2 acaattaaattgtgtgagctctaaccactaaacta 36  Q
    |||||||||||||||||||||||||||||| ||||    
T  43398392 acaattaaattgtgtgagctctaaccactagacta 43398426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 2806490 - 2806462
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccac 29  Q
    |||||||||||||||||||||||||||||    
T  2806490 cacaattaaattgtgtgagctctaaccac 2806462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 10478222 - 10478257
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  10478222 cacaattaaattgtgtgagctctaaccactaaacta 10478257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 43667945 - 43667907
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaactattt 39  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  43667945 cacaattaaattgtgtgagttctaaccactaaactattt 43667907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 2754442 - 2754477
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  2754442 cacaattaaattgtgtgagctctagccactaaacta 2754477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 35283583 - 35283618
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||| ||||||||||||||||||||||||||||    
T  35283583 cacaatttaattgtgtgagctctaaccactaaacta 35283618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 36726643 - 36726678
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  36726643 cacaattaaattgtgtgagctctaaccactagacta 36726678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 4553534 - 4553504
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  4553534 cacaattaaattgtgtgagctctaaccacta 4553504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 7961785 - 7961815
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  7961785 cacaattaaattgtgtgagctctaaccacta 7961815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 16526165 - 16526135
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  16526165 cacaattaaattgtgtgagctctaaccacta 16526135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 32589477 - 32589447
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  32589477 cacaattaaattgtgtgagctctaaccacta 32589447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 40375303 - 40375273
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  40375303 cacaattaaattgtgtgagctctaaccacta 40375273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 47930659 - 47930629
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  47930659 cacaattaaattgtgtgagctctaaccacta 47930629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 18216989 - 18217026
Alignment:
Q  2 acaattaaattgtgtgagctctaaccactaaactattt 39  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  18216989 acaattaaattgtgtgagctctagccactaagctattt 18217026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 46867841 - 46867804
Alignment:
Q  2 acaattaaattgtgtgagctctaaccactaaactattt 39  Q
    ||||||||||||||||||||||||||| || |||||||    
T  46867841 acaattaaattgtgtgagctctaaccattagactattt 46867804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 24333652 - 24333688
Alignment:
Q  3 caattaaattgtgtgagctctaaccactaaactattt 39  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  24333652 caattaaattgtgtgagctctagccattaaactattt 24333688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 9220241 - 9220203
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaactattt 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  9220241 cacaattaaattgtgtgagctctagccactaaactattt 9220203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 4860243 - 4860278
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  4860243 cacaattaaattgtgtgagctctaaccactagacta 4860278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 4880251 - 4880286
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  4880251 cacaattaaattgtgtgagctctaaccactagacta 4880286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 23164141 - 23164106
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  23164141 cacaattaaattgtgtgagctctagccactaaacta 23164106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 28195812 - 28195847
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||||||||||||||| ||||||||||||||||    
T  28195812 cacaattaaattgtgtgagttctaaccactaaacta 28195847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 32256542 - 32256507
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  32256542 cacaattaaattgtgtgagctctagccactaaacta 32256507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 45512983 - 45512948
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  45512983 cacaattaaattgtgtgagctctaaccactagacta 45512948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 10349482 - 10349512
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  10349482 cacaattaaattgtgtgagctctaaccacta 10349512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 15975234 - 15975264
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  15975234 cacaattaaattgtgtgagctctaaccacta 15975264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 21405236 - 21405274
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaactattt 39  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  21405236 cacaattaaattatgtgagctctaaccactagactattt 21405274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 32429829 - 32429859
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  32429829 cacaattaaattgtgtgagctctaaccacta 32429859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 48546256 - 48546286
Alignment:
Q  2 acaattaaattgtgtgagctctaaccactaa 32  Q
    |||||||||||||||||||||||||||||||    
T  48546256 acaattaaattgtgtgagctctaaccactaa 48546286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 39728 - 39763
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  39728 cacaattaaattgtgtgagctctaactactaaacta 39763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 22574952 - 22574987
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  22574952 cacaattaaattgtgtgagctctaaccactagacta 22574987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 216288 - 216318
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  216288 cacaattaaattgtgtgagctctaaccacta 216318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 8297709 - 8297739
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  8297709 cacaattaaattgtgtgagctctaaccacta 8297739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9069316 - 9069351
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    |||||||||| |||||||||||||||||||||||||    
T  9069316 cacaattaaactgtgtgagctctaaccactaaacta 9069351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 10758791 - 10758756
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  10758791 cacaattaaattgtgtgagctctagccactaaacta 10758756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22931605 - 22931570
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  22931605 cacaattaaattgtgtgagctctaaccactagacta 22931570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 27498659 - 27498694
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaacta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  27498659 cacaattaaattgtgtgagctctagccactaaacta 27498694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 546884 - 546914
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  546884 cacaattaaattgtgtgagctctaaccacta 546914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 8282830 - 8282864
Alignment:
Q  4 aattaaattgtgtgagctctaaccactaaactatt 38  Q
    ||||||||||||||||||||||||||||| |||||    
T  8282830 aattaaattgtgtgagctctaaccactaagctatt 8282864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 9688660 - 9688630
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  9688660 cacaattaaattgtgtgagctctaaccacta 9688630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 13876309 - 13876271
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaactattt 39  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  13876309 cacaatttaactgtgtgagctctaaccactaaactattt 13876271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 17967606 - 17967576
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||||    
T  17967606 cacaattaaattgtgtgagctctaaccacta 17967576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 18026816 - 18026778
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaactattt 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  18026816 cacaattaaattgtgtgagctctagccactatactattt 18026778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 19891414 - 19891376
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaactattt 39  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  19891414 cacaattaaattgtgtgagctctatccaccaaactattt 19891376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 42367012 - 42367050
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaactattt 39  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  42367012 cacaattaaattgtatgagctctaaccactagactattt 42367050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 42525482 - 42525520
Alignment:
Q  1 cacaattaaattgtgtgagctctaaccactaaactattt 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  42525482 cacaattaaattgtgtgagctctagccactagactattt 42525520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 31581568 - 31581597
Alignment:
Q  2 acaattaaattgtgtgagctctaaccacta 31  Q
    ||||||||||||||||||||||||||||||    
T  31581568 acaattaaattgtgtgagctctaaccacta 31581597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 20719822 - 20719850
Alignment:
Q  3 caattaaattgtgtgagctctaaccacta 31  Q
    |||||||||||||||||||||||||||||    
T  20719822 caattaaattgtgtgagctctaaccacta 20719850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University