View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21408_high_20 (Length: 310)
Name: NF21408_high_20
Description: NF21408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21408_high_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 8203199 - 8202907
Alignment:
| Q |
18 |
tcatgattattttcgagctttatatttggcttggaatttaagtttcaatttctattagttaaatgatttgatttttgaatttacagaaactcagaacccg |
117 |
Q |
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| T |
8203199 |
tcatgattattttcgagctttatatttggcttggaatttaagtttcaatttctattagttaaatgatttgatttttgaatttacagaaactcagaacccg |
8203100 |
T |
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| Q |
118 |
ctgcnnnnnnnnctttacaaaccttgtccatgattttgccctttttcctgatgagaattagttctcaactgaagattacattattaatcctacaattaac |
217 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8203099 |
ctgcttttttatctttacaaaccttgtccatgattttgccctttttcctgatgagaattagttctcaactgaagattacattattattcctacaattaac |
8203000 |
T |
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| Q |
218 |
cccagaaatcagaagattttctgtttttgatgcatgtgaaccatggaaaacatgattgtaaattcctgtctgtatgtatttttgccgtagaat |
310 |
Q |
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| T |
8202999 |
cccagaaatcagaatattttctgtttttgatgcatgtgaaccatggaaaacatgattgtaaattcctgtctgtaggtctttttgccgtagaat |
8202907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 42360317 - 42360037
Alignment:
| Q |
18 |
tcatgattattttcgagctttatatttggcttggaatttaagtttcaatttctattagttaaatgatttgatttttgaatttacagaaactcagaacccg |
117 |
Q |
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|||||||||||||||||||||||| ||||||||||||| || |||||||||||| ||||||||||||| || | ||| ||||||||| ||| ||| | | |
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| T |
42360317 |
tcatgattattttcgagctttatacttggcttggaattcaaatttcaatttctactagttaaatgatt-gaatattgtatttacagacacttagactctg |
42360219 |
T |
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| Q |
118 |
ctgcnnnnnnnn--ctttacaaaccttgtccatgattttgccctttttcctgatgagaattagttctcaa-ctgaagattacattattaatcctacaatt |
214 |
Q |
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|||| ||| ||||| | ||||||||||||| |||||||| ||||||| |||||||||| || | ||||||||||| ||||||||||||||| |
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| T |
42360218 |
ctgctttattttttcttcacaaaacctgtccatgattttacccttttttctgatgaaaattagttctgaaaccgaagattacatgattaatcctacaatt |
42360119 |
T |
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| Q |
215 |
aaccccagaaatcagaagattttctgtttttgatgcatgtgaaccatggaaaacatgattgtaaattcctgtctgtatgtat |
296 |
Q |
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| T |
42360118 |
aaccccagaaattcgaagaatatctatttttgatgtatgtgctccttggaaaacatgattgtaaattcctatctgtatgtat |
42360037 |
T |
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