View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21408_high_3 (Length: 606)
Name: NF21408_high_3
Description: NF21408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21408_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-122; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 298 - 549
Target Start/End: Original strand, 2348867 - 2349120
Alignment:
| Q |
298 |
aagctagcattcaagagtaatacaact--aattctacttctatccaccaacctcatccaaaacacaacaccatctagctacaatggatttagatttaagc |
395 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2348867 |
aagctagcattcaagagtaatacaactctaattctacttctatccaccaacctcgtacaaaacacaacaccatctagctacaatggatttagatttaagc |
2348966 |
T |
|
| Q |
396 |
agtttaataaacgctacaacaattgcactcctaatttctctaattcccctatgtttatttctatttagactctcaaaattttctaacagcaaaaacaaag |
495 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
2348967 |
agtttaataaacgccacaacaattgcactcctaatttctctaattcccctatgtttatttctatttggactctcaaaattttctcacagcaaaaacaaag |
2349066 |
T |
|
| Q |
496 |
aagcacccatagctaaaggtgcatggccaatacttggtcacctcccaattttta |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2349067 |
aagcacccatagctaaaggtgcatggccaatacttggtcacctcccaattttta |
2349120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 2348589 - 2348802
Alignment:
| Q |
20 |
ggggcatgtggttgatagttgtctttcacaactttaaacgatgtcatcaaacgtcttaaaaatgactacctaatcgtaactcaatccgataatcttagcc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2348589 |
ggggcatgtggttgatagttgtctttcacaactttaaacgatgtcatcaaacgtcttaaaaatgactatctaatcgtaactcaatccgataatcttagcc |
2348688 |
T |
|
| Q |
120 |
gtggtaattttcaaattccaaaacaacacttaaaatcgtgttcaagatcaattataatttacgttatgtgagggagatatatattattggtttttgtaca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2348689 |
gtggtaattttcaaattccaaaacaacacttaaaatcgtgttcaagatcaattataatttacgttatgtgagggagatatatattattggtttttgtaca |
2348788 |
T |
|
| Q |
220 |
catatccacaaaca |
233 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
2348789 |
catattcacaaaca |
2348802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 538 - 606
Target Start/End: Complemental strand, 2349229 - 2349161
Alignment:
| Q |
538 |
tcccaatttttaagtattaaagcatgtttagaaccaagcttgatagtgaatattggtccatatttatca |
606 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2349229 |
tcccaattgttaagtattaaagcatgtttagaaccaagcttgatagtgaatattggtccatatttatca |
2349161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 400 - 549
Target Start/End: Original strand, 2305601 - 2305750
Alignment:
| Q |
400 |
taataaacgctacaacaattgcactccta-atttctctaattcccctatgtttatttctatttagactctcaaaattttctaacagcaaaaacaaagaag |
498 |
Q |
| |
|
|||||||| | ||||||||||||||||| ||||| || ||||||||||||| ||||||||| || ||||||||||| | | ||||||| |||||| | |
|
|
| T |
2305601 |
taataaactcaacaacaattgcactcctttatttcatta-ttcccctatgtttgtttctatttggattctcaaaatttgttcatagcaaaaccaaagagg |
2305699 |
T |
|
| Q |
499 |
cacccatagctaaaggtgcatggccaatacttggtcacctcccaattttta |
549 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
2305700 |
caccaatagccgaaggtgcatggccaatacttggtcacctctcacttttta |
2305750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 538 - 606
Target Start/End: Complemental strand, 2305859 - 2305791
Alignment:
| Q |
538 |
tcccaatttttaagtattaaagcatgtttagaaccaagcttgatagtgaatattggtccatatttatca |
606 |
Q |
| |
|
|||||||| || || ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
2305859 |
tcccaattgttgagaattaaagcacgtttagaaccaagcttgatggtgaataatggtccatatttatca |
2305791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 538 - 606
Target Start/End: Complemental strand, 2338180 - 2338112
Alignment:
| Q |
538 |
tcccaatttttaagtattaaagcatgtttagaaccaagcttgatagtgaatattggtccatatttatca |
606 |
Q |
| |
|
|||||||| || ||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
2338180 |
tcccaattgttgagtattaaagcatgtttagtgccaagcttgatggtgaataatggtccatatttatca |
2338112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 438 - 548
Target Start/End: Original strand, 2337960 - 2338070
Alignment:
| Q |
438 |
attcccctatgtttatttctatttagactctcaaaattttctaacagcaaaaacaaagaagcacccatagctaaaggtgcatggccaatacttggtcacc |
537 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||| || | | |||||||| ||||| || || ||||| ||||||||||||||||||||||||| | |
|
|
| T |
2337960 |
attcccctatgtttgattctatttggattctcaaaagttgttcatagcaaaaataaagaggcgccaatagccgaaggtgcatggccaatacttggtcatc |
2338059 |
T |
|
| Q |
538 |
tcccaattttt |
548 |
Q |
| |
|
|| || ||||| |
|
|
| T |
2338060 |
tctcacttttt |
2338070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 2348287 - 2348349
Alignment:
| Q |
89 |
ctaatcgtaactcaatccgataatcttagccgtggtaattttcaaattccaaaacaacactta |
151 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| |||||||| ||| ||||||||||||| |
|
|
| T |
2348287 |
ctaatcgtaactcaatccgataatcttttcgatggtgattttcaatttcgaaaacaacactta |
2348349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 542
Target Start/End: Original strand, 2355735 - 2355764
Alignment:
| Q |
513 |
ggtgcatggccaatacttggtcacctccca |
542 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
2355735 |
ggtgcatggccaatacttggtcacctccca |
2355764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 371 - 548
Target Start/End: Complemental strand, 5806395 - 5806224
Alignment:
| Q |
371 |
agctacaatggatttagatttaagcagtttaataaacgctacaacaattgcactcctaatttctctaattcccctatgtttatttctatttagactctca |
470 |
Q |
| |
|
||||| ||||||||||| | ||| ||| ||||||| || ||| || || |||||||||||| ||| ||| | |||||| |||||| || |||| |
|
|
| T |
5806395 |
agctaaaatggatttagttctaaacagcctaataaatgccacaccatttacactcctaatttttcttatttcactatgt------ctatttggattctct |
5806302 |
T |
|
| Q |
471 |
aaattttctaacagcaaaaacaaagaagcacccatagctaaaggtgcatggccaatacttggtcacctcccaattttt |
548 |
Q |
| |
|
|||||| || | |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5806301 |
aaatttgctcatagcaaaaacaaagaggcaccaatagccaaaggtgcatggccaatacttggtcacctcccaattttt |
5806224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 538 - 606
Target Start/End: Original strand, 5806114 - 5806182
Alignment:
| Q |
538 |
tcccaatttttaagtattaaagcatgtttagaaccaagcttgatagtgaatattggtccatatttatca |
606 |
Q |
| |
|
|||||||| || |||| ||| |||||||||| |||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
5806114 |
tcccaattgttgagtactaaggcatgtttaggaccaagcttgatggtgaatattggtccatgtttatca |
5806182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University