View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21408_high_30 (Length: 241)
Name: NF21408_high_30
Description: NF21408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21408_high_30 |
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| [»] chr6 (7 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 2349385 - 2349161
Alignment:
| Q |
17 |
atctctaaggttacaattttgcgaagttcacgccaataaggaccataaggtccaaagccaaatacggctcctccataggctaagtgttcggttgaaatga |
116 |
Q |
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| T |
2349385 |
atctctaaggttacaattttgcgaagttcacgccaataaggaccataaggtccaaagccaaatacggctcctccataggctaagtgttcggttgaaatga |
2349286 |
T |
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| Q |
117 |
gcttgggacgagacgaaacaaccatgtcgtgtgtagtgaaacattccttggcaatttcccaattgttaagtattaaagcatgtttagaaccaagcttgat |
216 |
Q |
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| T |
2349285 |
gcttgggacgagacgaaacaaccatgtcgtgtgtagtgaaacattccttggcaatttcccaattgttaagtattaaagcatgtttagaaccaagcttgat |
2349186 |
T |
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| Q |
217 |
agtgaatattggtccatatttatca |
241 |
Q |
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| T |
2349185 |
agtgaatattggtccatatttatca |
2349161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 2306013 - 2305791
Alignment:
| Q |
19 |
ctctaaggttacaattttgcgaagttcacgccaataaggaccataaggtccaaagccaaatacggctcctccataggctaagtgttcggttgaaatgagc |
118 |
Q |
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| T |
2306013 |
ctctagggttacaatcttgcgaagttggcgccaataaggaccatacggaccaaaaccaaacattgctccattatagcccaagtgtttcgttgcaacaagc |
2305914 |
T |
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| Q |
119 |
ttgggacgagacgaaacaaccatgtcgtgtgtagtgaaacattccttggcaatttcccaattgttaagtattaaagcatgtttagaaccaagcttgatag |
218 |
Q |
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| T |
2305913 |
ttgggacgagacgaaacgaccatgtcgtgtgtagtaaaacattccttggccatttcccaattgttgagaattaaagcacgtttagaaccaagcttgatgg |
2305814 |
T |
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| Q |
219 |
tgaatattggtccatatttatca |
241 |
Q |
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| T |
2305813 |
tgaataatggtccatatttatca |
2305791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 2338334 - 2338112
Alignment:
| Q |
19 |
ctctaaggttacaattttgcgaagttcacgccaataaggaccataaggtccaaagccaaatacggctcctccataggctaagtgttcggttgaaatgagc |
118 |
Q |
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| T |
2338334 |
ctctaaggttacaatcttgcgaagttggcgccaataaggaccatatggtgcaagaccaaacatggctccattataacccaagtgttctgttgcaacaagc |
2338235 |
T |
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| Q |
119 |
ttgggacgagacgaaacaaccatgtcgtgtgtagtgaaacattccttggcaatttcccaattgttaagtattaaagcatgtttagaaccaagcttgatag |
218 |
Q |
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|| |||||||||||||| ||| |||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||| | |
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| T |
2338234 |
tttggacgagacgaaacgaccgtgtcgttcgtagtgaaacattccttggccatttcccaattgttgagtattaaagcatgtttagtgccaagcttgatgg |
2338135 |
T |
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| Q |
219 |
tgaatattggtccatatttatca |
241 |
Q |
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| T |
2338134 |
tgaataatggtccatatttatca |
2338112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 235
Target Start/End: Complemental strand, 2295236 - 2295132
Alignment:
| Q |
131 |
gaaacaaccatgtcgtgtgtagtgaaacattccttggcaatttcccaattgttaagtattaaagcatgtttagaaccaagcttgatagtgaatattggtc |
230 |
Q |
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|||||||| ||||| | | | ||||||||||| ||||| | |||||||||||| |||| ||||||||| ||| ||| |||||||| |||||||| |||| |
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| T |
2295236 |
gaaacaactatgtcatttttggtgaaacattctttggctaattcccaattgtttagtaccaaagcatgtgtagcacctagcttgattgtgaatatgggtc |
2295137 |
T |
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| Q |
231 |
catat |
235 |
Q |
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||||| |
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| T |
2295136 |
catat |
2295132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 2355901 - 2355812
Alignment:
| Q |
152 |
gtgaaacattccttggcaatttcccaattgttaagtattaaagcatgtttagaaccaagcttgatagtgaatattggtccatatttatca |
241 |
Q |
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| T |
2355901 |
gtgaaacattccttcgccatttccgaattgctaagtaccaaagcatttttggaaccaagtttgatggtgaacaagggtccatatttatca |
2355812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 2361584 - 2361495
Alignment:
| Q |
152 |
gtgaaacattccttggcaatttcccaattgttaagtattaaagcatgtttagaaccaagcttgatagtgaatattggtccatatttatca |
241 |
Q |
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| T |
2361584 |
gtgaaacattcctttgccatttcccaattgctaacaaccaaagcacgtttggaaccaagcttaatagtgaacaagggtccatatttatca |
2361495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 2366188 - 2366099
Alignment:
| Q |
152 |
gtgaaacattccttggcaatttcccaattgttaagtattaaagcatgtttagaaccaagcttgatagtgaatattggtccatatttatca |
241 |
Q |
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|||||||||||||| || |||||||||||| |||| | |||||| |||| ||||||| ||| |||||||| | ||||||||||||||| |
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| T |
2366188 |
gtgaaacattcctttgccatttcccaattgctaagaaccaaagcacgtttggaaccaatcttaatagtgaacaagggtccatatttatca |
2366099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 241
Target Start/End: Original strand, 5805988 - 5806182
Alignment:
| Q |
47 |
cgccaataaggaccataaggtccaaagccaaatacggctcctccataggctaagtgttcggttgaaatgagcttgggacgagacgaaacaaccatgtcgt |
146 |
Q |
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|||||||| |||||||| | |||||||||| | ||||||| ||| ||||||||||| |||| || ||||| |||||||||||||| | ||| || | |
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| T |
5805988 |
cgccaatatggaccataggccgcaaagccaaacatggctcctttataagctaagtgttcagttgcaacaagctttggacgagacgaaacgatcatatcat |
5806087 |
T |
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| Q |
147 |
gtgtagtgaaacattccttggcaatttcccaattgttaagtattaaagcatgtttagaaccaagcttgatagtgaatattggtccatatttatca |
241 |
Q |
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|||||||||||||||||| || |||||||||||||| |||| ||| |||||||||| |||||||||||| |||||||||||||||| ||||||| |
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| T |
5806088 |
ttgtagtgaaacattccttagccatttcccaattgttgagtactaaggcatgtttaggaccaagcttgatggtgaatattggtccatgtttatca |
5806182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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