View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21408_high_32 (Length: 238)
Name: NF21408_high_32
Description: NF21408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21408_high_32 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 22841029 - 22841233
Alignment:
| Q |
19 |
ggagcaaggttcagttacattggtgatgacaatattgttaattgtatttctgttccaatatcttcccaaaatttatcactcagtatgccatttgcgacgg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22841029 |
ggagcaaggttcagttacattggtgatgacaatatttttaattgtatttctgttccaatatcttcccaaaatttatcactcagtatgccatttgcgacgg |
22841128 |
T |
|
| Q |
119 |
acacaaaacctatctggctacatttttggaactgtttggtggggtattgcccttaacatgattgcgtattttgttgcttcccatgtaagttgctacacct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22841129 |
acacaaaacctatctggctacatttttggaactgtttggtggggtattgcccttaacatgattgcgtattttgttgcttcccatgtaagttgctacacct |
22841228 |
T |
|
| Q |
219 |
ttctt |
223 |
Q |
| |
|
||||| |
|
|
| T |
22841229 |
ttctt |
22841233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University