View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21408_high_35 (Length: 229)

Name: NF21408_high_35
Description: NF21408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21408_high_35
NF21408_high_35
[»] scaffold0177 (8 HSPs)
scaffold0177 (2-204)||(21669-21871)
scaffold0177 (43-215)||(21995-22167)
scaffold0177 (2-194)||(21847-22040)
scaffold0177 (2-143)||(22811-22952)
scaffold0177 (134-208)||(21478-21552)
scaffold0177 (110-194)||(22928-23012)
scaffold0177 (2-75)||(21442-21516)
scaffold0177 (2-74)||(21630-21703)
[»] chr7 (5 HSPs)
chr7 (57-210)||(40589700-40589853)
chr7 (2-102)||(40589639-40589740)
chr7 (71-140)||(43181223-43181292)
chr7 (71-140)||(43181292-43181361)
chr7 (71-131)||(43181361-43181421)
[»] chr2 (4 HSPs)
chr2 (2-207)||(33866356-33866561)
chr2 (2-207)||(33866188-33866393)
chr2 (43-207)||(33866061-33866225)
chr2 (2-150)||(33866524-33866672)
[»] chr6 (4 HSPs)
chr6 (57-194)||(27901596-27901733)
chr6 (125-210)||(19284499-19284584)
chr6 (2-91)||(27901531-27901620)
chr6 (2-102)||(19284438-19284539)
[»] scaffold1425 (3 HSPs)
scaffold1425 (71-183)||(1720-1832)
scaffold1425 (116-210)||(1-95)
scaffold1425 (2-80)||(55-134)
[»] scaffold0320 (2 HSPs)
scaffold0320 (116-210)||(1-95)
scaffold0320 (56-132)||(123-199)
[»] chr8 (7 HSPs)
chr8 (56-166)||(24632608-24632719)
chr8 (67-147)||(24632115-24632195)
chr8 (114-195)||(22651358-22651439)
chr8 (9-167)||(24631911-24632075)
chr8 (4-166)||(24632276-24632439)
chr8 (2-119)||(22651270-22651383)
chr8 (2-97)||(24632498-24632595)
[»] chr3 (2 HSPs)
chr3 (2-101)||(2941043-2941142)
chr3 (114-214)||(2941099-2941198)
[»] chr1 (2 HSPs)
chr1 (79-147)||(33036753-33036821)
chr1 (79-147)||(33036845-33036913)
[»] scaffold0585 (2 HSPs)
scaffold0585 (8-98)||(1590-1681)
scaffold0585 (176-210)||(1647-1681)
[»] chr4 (3 HSPs)
chr4 (63-110)||(15983840-15983887)
chr4 (63-110)||(15983907-15983954)
chr4 (63-110)||(15983974-15984021)
[»] scaffold0036 (3 HSPs)
scaffold0036 (178-210)||(93246-93278)
scaffold0036 (178-210)||(93305-93337)
scaffold0036 (178-210)||(93364-93396)


Alignment Details
Target: scaffold0177 (Bit Score: 171; Significance: 6e-92; HSPs: 8)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 2 - 204
Target Start/End: Complemental strand, 21871 - 21669
Alignment:
Q  2 aggaacctttggtgacaaaaattttacctaccttttttggattggattcttgccaaatgcctaatatagttcattctagttatgtaatactaattttatg 101  Q
    |||||||||||||||| |||||||  |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21871 aggaacctttggtgaccaaaatttatcctaccttctttggcttggattcttgccaaatgcctaatatagttcattctagttttgtaatactaattttatg 21772  T
Q  102 atgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgaa 201  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21771 atgattatggacctaattaagaagttacttccctaaaataaagtttaaattaagttcgtctcccaaggaggaacctttggtgaccaaaatttaatccgaa 21672  T
Q  202 ctt 204  Q
    |||    
T  21671 ctt 21669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 43 - 215
Target Start/End: Complemental strand, 22167 - 21995
Alignment:
Q  43 ttggattcttgccaaatgcctaatatagttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataa 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  22167 ttggattcttgccaaatgcctaatatagttcattctagttatgtaatactaattttatgatgattatgaacctaattaacaagttacttccttaaaataa 22068  T
Q  143 agtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgaacttttttggattga 215  Q
    | ||||||||||||| |||||| |||||||||||||||||||||||||||||||  |||||||| ||| ||||    
T  22067 aatttaaattaagtttgtctcccaaggaggaacctttggtgaccaaaatttaatatgaacttttatggcttga 21995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 22040 - 21847
Alignment:
Q  2 aggaacctttggtgacaaaaattttacct-accttttttggattggattcttgccaaatgcctaatatagttcattctagttatgtaatactaattttat 100  Q
    |||||||||||||||| ||||||| |  | | ||||| ||| ||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||    
T  22040 aggaacctttggtgaccaaaatttaatatgaacttttatggcttgaattcttgccaaatgcctaatataattcattctagtaatgtaatactacttttat 21941  T
Q  101 gatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaattta 194  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21940 gatgattatggaccaaattaagaagttacttccctaaaataaagtttaaattaagttcgtctcgaaaggaggaacctttggtgaccaaaattta 21847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 22952 - 22811
Alignment:
Q  2 aggaacctttggtgacaaaaattttacctaccttttttggattggattcttgccaaatgcctaatatagttcattctagttatgtaatactaattttatg 101  Q
    |||||||||||||||| |||||||  |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22952 aggaacctttggtgaccaaaatttatcctaccttttttggcttggattcttgtcaaatgcctaatatagttcattctagttatgtaatactaattttatg 22853  T
Q  102 atgattatggacctaattaacaagttacttccctaaaataaa 143  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  22852 atgattatggacataattaacaagttacttccctaaaataaa 22811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 134 - 208
Target Start/End: Complemental strand, 21552 - 21478
Alignment:
Q  134 ctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgaactttttt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21552 ctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacaaaaatttaatccgaactttttt 21478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 23012 - 22928
Alignment:
Q  110 ggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaattta 194  Q
    ||||||||||||||| ||| || || ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  23012 ggacctaattaacaacttaatttccgaaaattaagtttaaattaagttcgtctcccaagaaggaacctttggtgaccaaaattta 22928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 21516 - 21442
Alignment:
Q  2 aggaacctttggtgacaaaaatttta-cctaccttttttggattggattcttgccaaatgcctaatatagttcat 75  Q
    |||||||||||||||||||||||| | || | ||||||| | ||||||||||||||||| |||||||||||||||    
T  21516 aggaacctttggtgacaaaaatttaatccgaactttttttgcttggattcttgccaaatacctaatatagttcat 21442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 21703 - 21630
Alignment:
Q  2 aggaacctttggtgacaaaaatttta-cctaccttttttggattggattcttgccaaatgcctaatatagttca 74  Q
    |||||||||||||||| ||||||| | || | ||| | ||| ||| ||||||||||||||||||||||||||||    
T  21703 aggaacctttggtgaccaaaatttaatccgaacttgtatggcttgaattcttgccaaatgcctaatatagttca 21630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 57 - 210
Target Start/End: Complemental strand, 40589853 - 40589700
Alignment:
Q  57 aatgcctaatatagttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagt 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40589853 aatgcctaatatagttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaatataaagtttaaattaagt 40589754  T
Q  157 tcgtctccaaaggaggaacctttggtgaccaaaatttaatccgaacttttttgg 210  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40589753 acgtctccaaatgaggaacctttggtgaccaaaatttaatccgaacttttttgg 40589700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 40589740 - 40589639
Alignment:
Q  2 aggaacctttggtgacaaaaatttta-cctaccttttttggattggattcttgccaaatgcctaatatagttcattctagttatgtaatactaattttat 100  Q
    |||||||||||||||| ||||||| | || | ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40589740 aggaacctttggtgaccaaaatttaatccgaacttttttggtttggattcttgccaaatgcctaatatagttcattttagttatgtaatactaattttat 40589641  T
Q  101 ga 102  Q
    ||    
T  40589640 ga 40589639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 43181223 - 43181292
Alignment:
Q  71 ttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaat 140  Q
    |||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||    
T  43181223 ttcattctagttatataatactaattttatgatgattatagaccaaattaataagttacttccctaaaat 43181292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 43181292 - 43181361
Alignment:
Q  71 ttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaat 140  Q
    |||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||    
T  43181292 ttcattctagttatataatactaattttatgatgattatagaccaaattaataagttacttccctaaaat 43181361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 43181361 - 43181421
Alignment:
Q  71 ttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttactt 131  Q
    |||||||||||||| |||||||||||||||||||||||| |||| |||||| |||||||||    
T  43181361 ttcattctagttatataatactaattttatgatgattatagaccaaattaataagttactt 43181421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 33866356 - 33866561
Alignment:
Q  2 aggaacctttggtgacaaaaatttta-cctaccttttttggattggattcttgccaaatgcctaatatagttcattctagttatgtaatactaattttat 100  Q
    |||||| | ||||||| ||||||||| ||||||||||| || |||||||||||| ||||| ||  |||||||||||||| |||||||||||| ||| |||    
T  33866356 aggaacttctggtgaccaaaattttatcctaccttttt-ggcttggattcttgctaaatgtctgctatagttcattctatttatgtaatactcattgtat 33866454  T
Q  101 gatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccga 200  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  33866455 gatgattatggacctaattaacaagtttctttcctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaattttatccta 33866554  T
Q  201 acttttt 207  Q
     ||||||    
T  33866555 ccttttt 33866561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 33866188 - 33866393
Alignment:
Q  2 aggaacctttggtgacaaaaatttta-cctaccttttttggattggattcttgccaaatgcctaatatagttcattctagttatgtaatactaattttat 100  Q
    |||||||||||||||| ||||||||| |||| |||||| || || |||||||||||||||| |  |||||||||||||| |||||||||||||||| |||    
T  33866188 aggaacctttggtgaccaaaattttatcctaacttttt-ggctttgattcttgccaaatgcttgctatagttcattctatttatgtaatactaattctat 33866286  T
Q  101 gatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccga 200  Q
    ||||||||||||||||| ||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||| | ||||||||||||||| |||| |    
T  33866287 gatgattatggacctaaataacaagtttcttccctaaaataatttttaaattaagttcgtctccaaaggaggaacttctggtgaccaaaattttatccta 33866386  T
Q  201 acttttt 207  Q
     ||||||    
T  33866387 ccttttt 33866393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 43 - 207
Target Start/End: Original strand, 33866061 - 33866225
Alignment:
Q  43 ttggattcttgccaaatgcctaatatagttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataa 142  Q
    ||||||||||| |||||| ||  |||||||||||||| |||||||||||| ||| | ||||||||||||||| ||||||||||||  ||| |||||||||    
T  33866061 ttggattcttgtcaaatgtctgctatagttcattctatttatgtaatactcattgtttgatgattatggacccaattaacaagttttttctctaaaataa 33866160  T
Q  143 agtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgaacttttt 207  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  33866161 agtacaaattaagttcgtctccaaaggaggaacctttggtgaccaaaattttatcctaacttttt 33866225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 150
Target Start/End: Original strand, 33866524 - 33866672
Alignment:
Q  2 aggaacctttggtgacaaaaatttta-cctaccttttttggattggattcttgccaaatgcctaatatagttcattctagttatgtaatactaattttat 100  Q
    |||||||||||||||| ||||||||| ||||||||||| || || ||||||| ||||||| ||  |||||||||||||| |||||||||||| ||| |||    
T  33866524 aggaacctttggtgaccaaaattttatcctaccttttt-ggcttcgattctttccaaatgtctgctatagttcattctatttatgtaatactcattgtat 33866622  T
Q  101 gatgattatggacctaattaacaagttacttccctaaaataaagtttaaa 150  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33866623 gatgattatggacctaattaacaagtttcttccctaaaataaagtttaaa 33866672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 57 - 194
Target Start/End: Complemental strand, 27901733 - 27901596
Alignment:
Q  57 aatgcctaatatagttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagt 156  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27901733 aatgcctaatatagttcattctagttatttaatactaattttatgatgattatggacctaattaacaagttacatccctaaaataaagtttaaattaagt 27901634  T
Q  157 tcgtctccaaaggaggaacctttggtgaccaaaattta 194  Q
    ||||||||||||||||||||||| || |||||||||||    
T  27901633 tcgtctccaaaggaggaacctttcgtaaccaaaattta 27901596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 125 - 210
Target Start/End: Complemental strand, 19284584 - 19284499
Alignment:
Q  125 gttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgaacttttttgg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||    
T  19284584 gttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaacatttaatccgatattttttgg 19284499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 27901620 - 27901531
Alignment:
Q  2 aggaacctttggtgacaaaaattttacctaccttttttggattggattcttgccaaatgcctaatatagttcattctagttatgtaatac 91  Q
    |||||||||| || || |||||||  |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27901620 aggaacctttcgtaaccaaaatttatcctaccttttttggcttggattcttgccaaattcctaatatagttcattctagttatgtaatac 27901531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 19284539 - 19284438
Alignment:
Q  2 aggaacctttggtgacaaaaatttta-cctaccttttttggattggattcttgccaaatgcctaatatagttcattctagttatgtaatactaattttat 100  Q
    |||||||||||||||| || |||| | || |  |||||||| ||||||||||||||||| || | |||||||||||||||||||||||||||| ||||||    
T  19284539 aggaacctttggtgaccaacatttaatccgatattttttggtttggattcttgccaaattccgattatagttcattctagttatgtaatactatttttat 19284440  T
Q  101 ga 102  Q
    ||    
T  19284439 ga 19284438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: scaffold1425
Description:

Target: scaffold1425; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 1720 - 1832
Alignment:
Q  71 ttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaagga 170  Q
    |||||||||||||| |||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1720 ttcattctagttatttaatactaatgttatgatgattatcgacctaattaaccagttacttccctaaaataaagtttaaattaagttcgtctccaaagga 1819  T
Q  171 ggaacctttggtg 183  Q
    |||||||||||||    
T  1820 ggaacctttggtg 1832  T

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Target: scaffold1425; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 1 - 95
Alignment:
Q  116 aattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgaacttttttgg 210  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1 aattaacaagttacttccctaaaataaagtttaaattgagttcgtctccataggaggaacctttggtgaccaaaatttaatccgaacttttttgg 95  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 55 - 134
Alignment:
Q  2 aggaacctttggtgacaaaaatttta-cctaccttttttggattggattcttgccaaatgcctaatatagttcattctag 80  Q
    |||||||||||||||| ||||||| | || | ||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  55 aggaacctttggtgaccaaaatttaatccgaacttttttggtttggattcttgcctaatgcctaatatagttcattctag 134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 1 - 95
Alignment:
Q  116 aattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgaacttttttgg 210  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1 aattaacaagttacttccctaaaataaggtttaaattaagttcgtctccaaagaaggaacctttggtgaccaaaatttaatccgaacttttttgg 95  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 123 - 199
Alignment:
Q  56 aaatgcctaatatagttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttc 132  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  123 aaatgcctaatatagatcattctagttatgtaatactaattttatgatgattatggacctatttaacaagttacttc 199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 166
Target Start/End: Complemental strand, 24632719 - 24632608
Alignment:
Q  56 aaatgcctaatatagttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaag-tttaaattaa 154  Q
    ||||||||| ||||||||||| || | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  24632719 aaatgcctactatagttcattatattgatgtaatactcattttatgatgattatggacctaattaacaagttacttccctaaaataaagttttaaattga 24632620  T
Q  155 gttcgtctccaa 166  Q
    ||||||||||||    
T  24632619 gttcgtctccaa 24632608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 24632195 - 24632115
Alignment:
Q  67 atagttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagttt 147  Q
    |||||||||| || | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24632195 atagttcattttattgatgtaatacttattttatgatgattatggacctaattaacaagttacttccctaaaataaagttt 24632115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 22651439 - 22651358
Alignment:
Q  114 ctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaa 195  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||| || ||||| |||||    
T  22651439 ctaattaacaagttactttcctaaaataaagtttaaactaagttcgtctgcaaaggaggaatctttgttgtccaaactttaa 22651358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 24632075 - 24631911
Alignment:
Q  9 tttggtgacaaaaattttacct-accttttttggattggattcttgccaaatgcctaatatagttcattctagttatgtaatactaattttat----gat 103  Q
    |||| |||| ||||||||| || ||||||||||| |||||| ||||  |||||  || |||||||||||||| | |||||||| |  ||||||     ||    
T  24632075 tttgttgactaaaattttatcttaccttttttggcttggatacttggaaaatgtttattatagttcattctactgatgtaataatcgttttataatgaat 24631976  T
Q  104 gattatggacctaattaacaagttacttccctaaaataaag-tttaaattaagttcgtctccaaa 167  Q
    |||| ||||| ||||||| ||||||||||||| |||||||| |||||||| ||||| ||||||||    
T  24631975 gattctggacataattaagaagttacttcccttaaataaagttttaaattgagttcttctccaaa 24631911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 166
Target Start/End: Complemental strand, 24632439 - 24632276
Alignment:
Q  4 gaacctttggtgacaaaaattttacctaccttttttggattggattcttgccaaatgcctaatatagttcattctagttatgtaatactaattttatgat 103  Q
    ||||||||| |||| ||||||||  ||| | ||||| | |||||| |||  |||||||||| |||||| ||||| | | ||  || ||| | | ||||||    
T  24632439 gaacctttgttgaccaaaatttttgctaacctttttcggttggatacttcgcaaatgcctactatagtccattcaattgatacaacactcaatgtatgat 24632340  T
Q  104 gattatggacctaattaacaagttacttccctaaaataaagt-ttaaattaagttcgtctccaa 166  Q
     ||||||||| ||||||||| |||||||||||||||| ||||  |||||| |||||||||||||    
T  24632339 cattatggacttaattaacatgttacttccctaaaattaagtactaaattgagttcgtctccaa 24632276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 22651383 - 22651270
Alignment:
Q  2 aggaacctttggtgacaaaaattttacctaccttttttggattggattcttgccaaatgcctaatatagttcattctagttatgtaatactaattttatg 101  Q
    ||||| ||||| || | ||| ||| ||| ||||||||| | ||||||||||||||| |||||| | |||||||||||| | ||||||    |||| ||||    
T  22651383 aggaatctttgttgtccaaactttaaccaaccttttttagcttggattcttgccaagtgcctactctagttcattctattaatgtaa----aattgtatg 22651288  T
Q  102 atgattatggacctaatt 119  Q
    || |||| ||||||||||    
T  22651287 ataattagggacctaatt 22651270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 24632595 - 24632498
Alignment:
Q  2 aggaacctttggtgacaaaaattttacctacc--ttttttggattggattcttgccaaatgcctaatatagttcattctagttatgtaatactaattt 97  Q
    ||||||||||| |||| ||||||||| ||| |  |||||||| || ||| |||| |||||||| |  ||||||||||||| | |||||||||| ||||    
T  24632595 aggaacctttgttgactaaaattttatctaacctttttttggcttcgatacttggcaaatgccaacaatagttcattctattgatgtaatactcattt 24632498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 2941142 - 2941043
Alignment:
Q  2 aggaacctttggtgacaaaaattttacctaccttttttggattggattcttgccaaatgcctaatatagttcattctagttatgtaatactaattttatg 101  Q
    |||||||||||||||| |||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2941142 aggaacctttggtgaccaaaatttatcctaccttttttggattggattcttaccaaatgcctaatatagttcattctggttatgtaatactaattttatg 2941043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 2941198 - 2941099
Alignment:
Q  114 ctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgaacttttttggatt 213  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| | ||||||||||||    
T  2941198 ctaattaagaagttacttccctaaaataaagtttaaattaagttcgtttccaatggaggaacctttggtgaccaaaattt-atcctaccttttttggatt 2941100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 33036753 - 33036821
Alignment:
Q  79 agttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagttt 147  Q
    |||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  33036753 agttatgtaatacttattttatgatgattatagaccaaattaacaagttacttccctaaaataaagttt 33036821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 33036845 - 33036913
Alignment:
Q  79 agttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagttt 147  Q
    |||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  33036845 agttatgtaatacttattttatgatgattatagaccaaattaacaagttacttccctaaaataaagttt 33036913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 1681 - 1590
Alignment:
Q  8 ctttggtgacaaaaatttta-cctaccttttttggattggattcttgccaaatgcctaatatagttcattctagttatgtaatactaatttt 98  Q
    |||||||||| ||||||| | || | ||||||||| || |||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  1681 ctttggtgaccaaaatttaatccaaacttttttggtttagattcttgcctaatgcctaatatagttcattctagttatttaatactaatttt 1590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 1681 - 1647
Alignment:
Q  176 ctttggtgaccaaaatttaatccgaacttttttgg 210  Q
    ||||||||||||||||||||||| |||||||||||    
T  1681 ctttggtgaccaaaatttaatccaaacttttttgg 1647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 15983840 - 15983887
Alignment:
Q  63 taatatagttcattctagttatgtaatactaattttatgatgattatg 110  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  15983840 taatattgttcattctagttatgtaatactaattttatgatgattatg 15983887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 15983907 - 15983954
Alignment:
Q  63 taatatagttcattctagttatgtaatactaattttatgatgattatg 110  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  15983907 taatattgttcattctagttatgtaatactaattttatgatgattatg 15983954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 15983974 - 15984021
Alignment:
Q  63 taatatagttcattctagttatgtaatactaattttatgatgattatg 110  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  15983974 taatattgttcattctagttatgtaatactaattttatgatgattatg 15984021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 93246 - 93278
Alignment:
Q  178 ttggtgaccaaaatttaatccgaacttttttgg 210  Q
    ||||||||||||||||||||| |||||||||||    
T  93246 ttggtgaccaaaatttaatccaaacttttttgg 93278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 93305 - 93337
Alignment:
Q  178 ttggtgaccaaaatttaatccgaacttttttgg 210  Q
    ||||||||||||||||||||| |||||||||||    
T  93305 ttggtgaccaaaatttaatccaaacttttttgg 93337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 93364 - 93396
Alignment:
Q  178 ttggtgaccaaaatttaatccgaacttttttgg 210  Q
    ||||||||||||||||||||| |||||||||||    
T  93364 ttggtgaccaaaatttaatccaaacttttttgg 93396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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