View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21408_high_5 (Length: 538)
Name: NF21408_high_5
Description: NF21408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21408_high_5 |
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| [»] scaffold0164 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Original strand, 43805767 - 43806288
Alignment:
| Q |
1 |
ttgcaaatgttggcttaaacacataactacaaaggttggtttcttataagcaattgcatagtagagatttccataagattgccaacaacataaaacaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43805767 |
ttgcaaatgttggcttaaacacataactacaaaggttggtttcttataagcaattgcatagtagagatttccataagattgccaacaacataaaacaatg |
43805866 |
T |
|
| Q |
101 |
tcaattccttagagacaaaagtttcggggtagactgcaatgggagaacaaaattttcaaaacgctatacagagggaaccaccctattaaatttcaaagta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43805867 |
tcaattccttagagacaaaagtttcggggtagactgcaaggggagaacaaaattttcaaaacgctatacagagggaaccaacctattaaatttcaaagta |
43805966 |
T |
|
| Q |
201 |
tgcatatttacaattccatttctccatcattgaacattaattgaattaatattaaagatggaaaaagcatggtgtgttgaccactacaaattcgtggcct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43805967 |
tgcatatttacaattccatttctccatcattgaacattaattgaattaatattaaagatggaaaaagcatggtgtgttgactactacaaattcgtggcct |
43806066 |
T |
|
| Q |
301 |
tgtggaccttacgagaataaggggaaattacaaacaaccacgattaaaatcttatgaaaagggaatggggggaaagatgtgaatgtataattgcctttgt |
400 |
Q |
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| T |
43806067 |
--------ttacgagaataaggggaaattacaaacaaccacagttaaaatcttatgaaaagggaatggggggaaagatgtgaatgtataattgcctttgt |
43806158 |
T |
|
| Q |
401 |
gaatgtatttgccaatcacgattattgagttgatattcaaaattcaatagtgtactacgtatcgaaagtgaacatgtatgtgttatttacgttagcgcag |
500 |
Q |
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| T |
43806159 |
gaatgtatttgccaatcacgattattgagttgatattcaaaattcaatagtgtactgcgtatcgaaagtgaacatatatgtgttatacacgttagcgcag |
43806258 |
T |
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| Q |
501 |
tataaaaagtggacagacatttggacgcta |
530 |
Q |
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| T |
43806259 |
tataaaaagcggacagacatttgaacgcta |
43806288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 128 - 301
Target Start/End: Original strand, 23125750 - 23125924
Alignment:
| Q |
128 |
ggtagactgcaatgggagaacaaaattttcaaaacgctatacagagggaa-ccaccctattaaatttcaaagtatgcatatttacaattccatttctcca |
226 |
Q |
| |
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|||||||||||| ||||||||||||| |||| || |||||||||| ||| |||| |||||||||||||||||||| || |||||||||||||||| ||| |
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| T |
23125750 |
ggtagactgcaagaggagaacaaaattgtcaagacactatacagagtgaaaccacactattaaatttcaaagtatgtatctttacaattccatttcccca |
23125849 |
T |
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| Q |
227 |
tcattgaacattaattgaattaatattaaagatggaaaaagcatggtgtgttgaccactacaaattcgtggcctt |
301 |
Q |
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| T |
23125850 |
tcattgaacattaattgaattaatattaaagatggaaaaagcagggtgcgttgaatactaggaattcatggcctt |
23125924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 23125620 - 23125725
Alignment:
| Q |
19 |
acacataactacaaaggttggtttcttataagcaattgcatagtagagatttccataagattgccaacaacataaaacaatgtcaattccttagagacaa |
118 |
Q |
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|||||||||| ||||||||||||||| ||||||||| || ||||||||||||| ||||| ||||| ||||||| ||| |||||| ||| || ||| |
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| T |
23125620 |
acacataactgaaaaggttggtttcttttaagcaatttgatgacagagatttccatatgattggcaacagcataaaaaaatttcaattttttacaggcaa |
23125719 |
T |
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| Q |
119 |
aagttt |
124 |
Q |
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|||||| |
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| T |
23125720 |
aagttt |
23125725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 8e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 128 - 274
Target Start/End: Complemental strand, 18694208 - 18694061
Alignment:
| Q |
128 |
ggtagactgcaatgggagaacaaaattttcaaaacgctatacagagggaa-ccaccctattaaatttcaaagtatgcatatttacaattccatttctcca |
226 |
Q |
| |
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|||||||||||| ||||||||||||| |||| || |||||||||| ||| |||| |||||||||||||||||||| || |||||||||||||||| ||| |
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| T |
18694208 |
ggtagactgcaaaaggagaacaaaattgtcaagacactatacagagtgaaaccacactattaaatttcaaagtatgtatctttacaattccatttcccca |
18694109 |
T |
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| Q |
227 |
tcattgaacattaattgaattaatattaaagatggaaaaagcatggtg |
274 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18694108 |
tcattgaacgttaattgaattaatattaaagatggaaaaagcatggtg |
18694061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 18694338 - 18694262
Alignment:
| Q |
19 |
acacataactacaaaggttggtttcttataagcaattgcatagtagagatttccataagattgccaacaacataaaa |
95 |
Q |
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|||||||||| ||||||||||||||| ||||||||| ||| |||||||||||||| ||||| ||||| ||||||| |
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| T |
18694338 |
acacataactgaaaaggttggtttcttttaagcaatttcatgatagagatttccatatgattggcaacagcataaaa |
18694262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 128 - 273
Target Start/End: Complemental strand, 13101 - 12955
Alignment:
| Q |
128 |
ggtagactgcaatgggagaacaaaattttcaaaacgctatacagagggaa-ccaccctattaaatttcaaagtatgcatatttacaattccatttctcca |
226 |
Q |
| |
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|||||||||||| ||||||||||||| |||| || ||||||| |||||| |||| |||||||||||||||||||| || |||||||||||||||| ||| |
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| T |
13101 |
ggtagactgcaagaggagaacaaaattatcaagacactatacatagggaaaccacactattaaatttcaaagtatgtatctttacaattccatttcccca |
13002 |
T |
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| Q |
227 |
tcattgaacattaattgaattaatattaaagatggaaaaagcatggt |
273 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13001 |
tcattgattgttaattgaattaatattaaagatggaaaaagcatggt |
12955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 13231 - 13144
Alignment:
| Q |
19 |
acacataactacaaaggttggtttcttataagcaattgcatagtagagatttccataagattgccaacaacataaaacaatgtcaatt |
106 |
Q |
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|||||||||| ||||||||||||||| ||||||||| ||| |||||||||||||| ||||| ||||| ||| ||| ||| |||||| |
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| T |
13231 |
acacataactgaaaaggttggtttcttttaagcaatttcatgatagagatttccatatgattggcaacatcatgaaaaaatttcaatt |
13144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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