View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21408_high_6 (Length: 502)
Name: NF21408_high_6
Description: NF21408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21408_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 19 - 487
Target Start/End: Complemental strand, 8203661 - 8203193
Alignment:
| Q |
19 |
gtctttgttggttctctactgtgtacccatattgatgtgtcttgcttacatttctgtgtaatctatttgttatttattttcaaacaattggttaaggtta |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8203661 |
gtctttgttggttctctactgtatacccatattgatgtgtcttgcttacatttctgtgtaatctatttgttatttattttcaaacaattggttaaggtta |
8203562 |
T |
|
| Q |
119 |
ttggttttgagagagtatgatgttttccattttggtttgaatcgctcaccggcttacatccccccatgcattaccaagttggatttagttttggctttga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8203561 |
ttggttttgagagagtatgatgttttccattttggtttgaatcgctcaccggcttacatccccccatgcattaccaagttggatttggttttggctttga |
8203462 |
T |
|
| Q |
219 |
gagagttcgttgtcttctgtcttgaaggcctttagaggtggtaataggggaattatacatctaccattcatggatgtgtttgttacgtaaatagttattt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8203461 |
gagagttcgttgtcttctgtcttgaaggcctttagaggtggtaataggggaattatacatctaccattcatggatgtgtttgttacgtaaatagttattt |
8203362 |
T |
|
| Q |
319 |
tgtcgtttacatgctgtttacttaacatatttatttcttgaataggaaaaactgaaagagaaaaaacctaccatgaccgaggcattgtctcagacacttc |
418 |
Q |
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||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8203361 |
tgttgtttacatgatgtctacttaacatatttatttcttgaataggaaaaactgaaagagaaaaaacctaccatgaccgaggcattgtctcagactcttc |
8203262 |
T |
|
| Q |
419 |
aagcgattcataaagctggatgcattagccttgttgatattgttgaaggcaggttccccccatcatgat |
487 |
Q |
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| T |
8203261 |
aagcgattcataaagctggatgcattagccttgttgatattgttgaaggcaggttccccccatcatgat |
8203193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 5e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 352 - 479
Target Start/End: Complemental strand, 42360456 - 42360329
Alignment:
| Q |
352 |
tttcttgaataggaaaaactgaaagagaaaaaacctaccatgaccgaggcattgtctcagacacttcaagcgattcataaagctggatgcattagccttg |
451 |
Q |
| |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
42360456 |
tttctttaataggaaaaattgaaagagaaaaaacctaccatgaccgaggcattgtctcagactcttcaagcgattcataaagctggatgcattagtcttg |
42360357 |
T |
|
| Q |
452 |
ttgatattgttgaaggcaggttcccccc |
479 |
Q |
| |
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||||| |||||||||||||||||||||| |
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| T |
42360356 |
ttgatgttgttgaaggcaggttcccccc |
42360329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 42360823 - 42360507
Alignment:
| Q |
19 |
gtctttgttggttctctactgtgtacccatatt---gatgtgtcttgcttacatttctgtgtaatctatttgttatttattttcaaacaattggttaa-- |
113 |
Q |
| |
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|||||||||||||||||| | |||||||||||| ||||||||| |||||||||||||||||| ||| || ||||||||| ||||||||||||| |
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| T |
42360823 |
gtctttgttggttctctattttgtacccatatttttgatgtgtctcaattacatttctgtgtaatcaattcattttttattttccaacaattggttaact |
42360724 |
T |
|
| Q |
114 |
ggttat-------tggttttgagagagtatgatgttttccattttggtttgaatcgctcaccggcttacatccccc-catgcattaccaagttggattta |
205 |
Q |
| |
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||||| |||||||||||| |||||| ||||| |||||| ||||||| ||||||||| |||||||||| |||||||||||| |||| || | |
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| T |
42360723 |
ggttaacgtgtgatggttttgagag--tatgattttttc-attttgatttgaattgctcaccggtatacatcccccacatgcattaccatgttgaatctt |
42360627 |
T |
|
| Q |
206 |
gtttt-ggctttgagagagttcgttgtcttctgtcttgaaggcctttagaggtggtaataggggaattatacatctaccattcatggatgtgtttgtt-a |
303 |
Q |
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||||| |||||||||| |||| |||||||||||||||||| ||||||||||||||||| ||||||||||| | |||| | |||||||| || |||||| | |
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| T |
42360626 |
gtttttggctttgagaaagttggttgtcttctgtcttgaacgcctttagaggtggtaacaggggaattatgcttctatcgttcatggaagtttttgttaa |
42360527 |
T |
|
| Q |
304 |
cgtaaatagttattttgtcg |
323 |
Q |
| |
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||||||||||||||||||| |
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| T |
42360526 |
agtaaatagttattttgtcg |
42360507 |
T |
|
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