View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21408_high_9 (Length: 458)
Name: NF21408_high_9
Description: NF21408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21408_high_9 |
 | |
|
| [»] scaffold0020 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 87 - 448
Target Start/End: Complemental strand, 44629991 - 44629627
Alignment:
| Q |
87 |
gtctaaaatatgtgtgattataaaaatagacaaatacacccatcaaatttaaaacttatgtaacaaatacccctcattaccttaattagtcctaacatat |
186 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44629991 |
gtctaaaatatgcgtggttataaaaatagacaaatacacccttcaaatttaaaacttatgtaacaaatacccctcattaccttaattagtcctaacatat |
44629892 |
T |
|
| Q |
187 |
gtaatttaatatgatgaagacaaatattcttcattcaacctgcaactctgaaactgtcataggcacataataacgcatcaaagcttctgtttctttttgt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44629891 |
gtaatttaatatgatgaagacaaatattcttcattcaacctgcaactctgaaactgtcataggcacataataacgcatcaaagcttctgtttctttttgt |
44629792 |
T |
|
| Q |
287 |
atttcg---ctgcctctnnnnnnnttatgctaatctctctcttctggatttcattactctgtatcattttagatttcatcttccaaagcaagtcaaacag |
383 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44629791 |
atttcgctactgcctctaaaaaaaatatgctaatctctctcttctggatttcattactctgtatcattttagatttcatcttccaaagcaagtcaaaaag |
44629692 |
T |
|
| Q |
384 |
aatactttagtatatatttcatgaatcaaataacactttaaaacaagccaagccaccgtcctttg |
448 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44629691 |
aatactttagtatatatttcatgaatcaattaacactttaaaacaagccaagccaccgtcctttg |
44629627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 47730095 - 47730012
Alignment:
| Q |
161 |
cattaccttaattagtcctaacatatgtaatttaatatgatgaagacaaatattcttcattcaacctgcaactctgaaactgtcata |
247 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||| |||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
47730095 |
cattaccttaattactcctaacatatataattaaatatcatgaaggcaaata---ttcattcaacctgcaactctgaaactgtcata |
47730012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 10036336 - 10036397
Alignment:
| Q |
87 |
gtctaaaatatgtgtgattataaaaatagacaaatacacccatcaaatttaaaacttatgta |
148 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||| | ||| |||||||||||||||||||| |
|
|
| T |
10036336 |
gtctaaaatttgtgtgattataaaaataggcaaatgcccccttcaaatttaaaacttatgta |
10036397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 24240821 - 24240879
Alignment:
| Q |
90 |
taaaatatgtgtgattataaaaatagacaaatacacccatcaaatttaaaacttatgta |
148 |
Q |
| |
|
|||||| | ||||||||||||||||| ||||||| ||| |||| ||||||||||||||| |
|
|
| T |
24240821 |
taaaatttttgtgattataaaaataggcaaatacccccctcaactttaaaacttatgta |
24240879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 123
Target Start/End: Original strand, 25143533 - 25143568
Alignment:
| Q |
88 |
tctaaaatatgtgtgattataaaaatagacaaatac |
123 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25143533 |
tctaaaatctgtgtgattataaaaatagacaaatac |
25143568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 35237200 - 35237143
Alignment:
| Q |
90 |
taaaatatgtgtgattataaaaatagacaaatacacccatcaaatttaaaacttatgta |
148 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
35237200 |
taaaatatgtgtgattataaaaatagataaata-tcctctcaaatttaaaacttatgta |
35237143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 21268071 - 21268115
Alignment:
| Q |
116 |
acaaatacacccatcaaatttaaaacttatgtaacaaatacccctc |
161 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
21268071 |
acaaataccccc-tcaaatttaaaacttatgtagcaaatacccctc |
21268115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 10326710 - 10326655
Alignment:
| Q |
90 |
taaaatatgtgtgattataaaaatagacaaatacacccatcaaatttaaaacttat |
145 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| || |||||||||| |||||| |
|
|
| T |
10326710 |
taaaatttgtgtgattataaaaataggcaaatacccctctcaaatttaacacttat |
10326655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 9028 - 8971
Alignment:
| Q |
90 |
taaaatatgtgtgattataaaaatagacaaatacacccatcaaatttaaaacttatgt |
147 |
Q |
| |
|
|||||| | ||||||||||||||||| ||||||| ||| |||| ||||| |||||||| |
|
|
| T |
9028 |
taaaatctatgtgattataaaaataggcaaatacccccctcaactttaatacttatgt |
8971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 22924080 - 22924016
Alignment:
| Q |
91 |
aaaatatgtgtgattataaaaatagacaaatacacccatcaaatttaaaacttatgtaacaaatac |
156 |
Q |
| |
|
||||| |||||||||||||||||| |||| || | | ||||||||||||||||| |||||||||| |
|
|
| T |
22924080 |
aaaatttgtgtgattataaaaataaacaattatcctc-tcaaatttaaaacttatataacaaatac |
22924016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University