View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21408_low_12 (Length: 429)
Name: NF21408_low_12
Description: NF21408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21408_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Complemental strand, 45031800 - 45031400
Alignment:
| Q |
19 |
ctaaacgcccttctgcaaactttacatgacttaccgactctcatgtcatgaagaaatcattgagttgtttcataccatttctgcttattgcagtatctgt |
118 |
Q |
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| T |
45031800 |
ctaaacgcccttctgcaaactttacatgacttaccgactctcatgtcatgaagaaatcattaagttgtttcataccatttctgcttattgcagtatctgt |
45031701 |
T |
|
| Q |
119 |
ttcatgagtagaagtatccttttgcaattcatctgagaaggcatgcgagtggcaagtagtatctggtgtatacaagcggctcattctccatggaaggatt |
218 |
Q |
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| T |
45031700 |
ttcatgagtagaagtatccttttgcaattcatctgagaaggcatgcgagtggcaagtagtatctggtgtatacatgcggctcattctccatggaaggatt |
45031601 |
T |
|
| Q |
219 |
gttggcatgtaactggcaggtagtatctggtgtatgcgtttcactccagttgcatggatcatctctctcagtcaatgcttggtatgcccggtaaaactaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45031600 |
gttggcatgtaactggcaggtagtatctggtgtatgcgtttcactccagttgcatggatcatctctctcagtcaatgcttggtatgcccggtaaaactaa |
45031501 |
T |
|
| Q |
319 |
tcaacaagtttcacaagctccagatgcttcttgtaatacattgctgccattctggtaaaggaatcatcatcttctttgagaagctttaacatttgcttca |
418 |
Q |
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| T |
45031500 |
tcaacaagtttcacaagctccagatgcttcttgtaatacattgctgccattctggtaaaggaatccacatcttctttgagaagctttaacatttgcttca |
45031401 |
T |
|
| Q |
419 |
t |
419 |
Q |
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| T |
45031400 |
t |
45031400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 38205141 - 38204932
Alignment:
| Q |
23 |
acgcccttctgcaaactttacatgacttaccgactctcatgtcatgaagaaatcattgagttgtttcataccatttctgcttattgcagtatctgtttca |
122 |
Q |
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||||||||||||||||||||||||||||| || |||| ||||||||| | ||||||||| ||||||| ||| ||||||||||||||||||||||||||| |
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| T |
38205141 |
acgcccttctgcaaactttacatgacttattgattctcctgtcatgaaaagatcattgagctgtttcaaaccctttctgcttattgcagtatctgtttca |
38205042 |
T |
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| Q |
123 |
tgagtagaagtatccttttgcaattcatctgag------aaggcatgcgagtggcaagtagtatctggtgtatacaagcggctcattctccatggaagga |
216 |
Q |
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|||||||||| |||||||||||||||||| ||| || ||||| || |||| |||| |||||| |||| | ||||||||||||||||||||| |
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| T |
38205041 |
tgagtagaaggatccttttgcaattcatccgagtcagaaaatgcatgtgaatggcgggtagcatctggcgtat----gtggctcattctccatggaagga |
38204946 |
T |
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| Q |
217 |
ttgttggcatgtaa |
230 |
Q |
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|||||||||||||| |
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| T |
38204945 |
ttgttggcatgtaa |
38204932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 259 - 383
Target Start/End: Complemental strand, 38204863 - 38204740
Alignment:
| Q |
259 |
tcactccagttgcatggatcatctctctcagtcaatgcttggtatgcccggtaaaactaatcaacaagtttcacaagctccagatgcttcttgtaataca |
358 |
Q |
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|||||||||||||||| ||||| |||||||| ||||||| |||||||||||||||||| ||||| | ||||| |||||| || ||||||||||||||| |
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| T |
38204863 |
tcactccagttgcatg-atcatatctctcagccaatgctcggtatgcccggtaaaactcttcaaccaatttcataagctctggacgcttcttgtaataca |
38204765 |
T |
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| Q |
359 |
ttgctgccattctggtaaaggaatc |
383 |
Q |
| |
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|| ||||| |||||| ||||||||| |
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| T |
38204764 |
tttctgcccttctggcaaaggaatc |
38204740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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