View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21408_low_13 (Length: 408)
Name: NF21408_low_13
Description: NF21408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21408_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 8240220 - 8240014
Alignment:
| Q |
12 |
ttttgattaaggaatttgttgaacatgaaaaggaaataaaagaaaatggatttcaactttgatgagtgaaaattcactagttttttgagatttcaacttt |
111 |
Q |
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| T |
8240220 |
ttttaattaaggaatttgttgaacatgaaaaggaaataaaagaaaatggatttcaactttgatgagtgaaaattcactagttttttgagatttcaacttc |
8240121 |
T |
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| Q |
112 |
acttgtttctatcttaacagaaaaatatctgagttaagagagaaggaaaacatttatctattgatgaaaacttaagggaggttattctccattttaaaac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8240120 |
acttgtttctatcttaacagaaaaatatctgagttaagagagaaggaaaacatttatctattgatgaaaatttaagggaggttattctccattttaaaac |
8240021 |
T |
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| Q |
212 |
tagaagg |
218 |
Q |
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||||||| |
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| T |
8240020 |
tagaagg |
8240014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 263 - 392
Target Start/End: Complemental strand, 8239986 - 8239859
Alignment:
| Q |
263 |
taaccttttttggggcaaaaaataaaggtttagttcaaaactgcaataaatgtaataattgtgtaccaaaatattcgagtttaaaaaaggagtactattt |
362 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8239986 |
taaccttttttgaggcaaaa--taaaggtttagttcaaaactgcaataaatgtaataattgtgtaccaaaatattcgagtttaaaaaaggagtactattt |
8239889 |
T |
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| Q |
363 |
atgcaagttttataaataagacaccaaagg |
392 |
Q |
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| T |
8239888 |
atgcaagttttataaataagacaccaaagg |
8239859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 42327655 - 42327743
Alignment:
| Q |
175 |
atgaaaacttaagggaggttattctccattttaaaactagaaggggtatttgcatcatttgaaaagaactcaagggaggtgaatgtaat |
263 |
Q |
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| T |
42327655 |
atgaaaacttaagggatgttagtgtctattttaaaactagagggggtgtccctatcatttaaagaaaactcaagggaggtgagtgtaat |
42327743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 54628514 - 54628468
Alignment:
| Q |
175 |
atgaaaacttaagggaggttattctccattttaaaactagaaggggt |
221 |
Q |
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||||||||||||||||||||| | || |||||||||||||| ||||| |
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| T |
54628514 |
atgaaaacttaagggaggttagtgtcgattttaaaactagagggggt |
54628468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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