View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21408_low_15 (Length: 353)

Name: NF21408_low_15
Description: NF21408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21408_low_15
NF21408_low_15
[»] chr3 (15 HSPs)
chr3 (6-103)||(50810706-50810803)
chr3 (6-103)||(50865061-50865158)
chr3 (6-96)||(50809575-50809665)
chr3 (6-96)||(50866197-50866287)
chr3 (18-103)||(53622871-53622956)
chr3 (20-97)||(54110098-54110175)
chr3 (13-103)||(11224662-11224752)
chr3 (20-93)||(44602857-44602930)
chr3 (21-103)||(24487134-24487216)
chr3 (18-103)||(13621139-13621224)
chr3 (36-97)||(21074109-21074170)
chr3 (18-103)||(49379921-49380006)
chr3 (19-96)||(34819096-34819174)
chr3 (19-96)||(10731941-10732018)
chr3 (19-96)||(26886499-26886575)
[»] chr8 (8 HSPs)
chr8 (6-103)||(28420046-28420143)
chr8 (16-96)||(28418960-28419040)
chr8 (18-103)||(42871035-42871120)
chr8 (18-97)||(43202325-43202401)
chr8 (16-103)||(31845605-31845692)
chr8 (18-94)||(9854690-9854766)
chr8 (20-96)||(42098791-42098867)
chr8 (18-96)||(6398327-6398405)
[»] chr6 (5 HSPs)
chr6 (6-103)||(232321-232418)
chr6 (6-103)||(233441-233538)
chr6 (18-103)||(11723006-11723091)
chr6 (18-96)||(17837843-17837921)
chr6 (18-96)||(29381541-29381619)
[»] chr4 (19 HSPs)
chr4 (14-103)||(1829969-1830058)
chr4 (16-103)||(54485427-54485514)
chr4 (18-100)||(40723447-40723529)
chr4 (18-92)||(6349362-6349434)
chr4 (22-97)||(36845635-36845710)
chr4 (44-103)||(38555115-38555174)
chr4 (14-76)||(54484487-54484549)
chr4 (18-103)||(1520030-1520115)
chr4 (20-93)||(45535274-45535347)
chr4 (18-93)||(52138603-52138678)
chr4 (17-103)||(26630009-26630095)
chr4 (18-100)||(34326949-34327031)
chr4 (20-93)||(23103822-23103895)
chr4 (18-103)||(27850748-27850832)
chr4 (17-76)||(42810013-42810072)
chr4 (18-94)||(26496121-26496197)
chr4 (24-73)||(22069485-22069534)
chr4 (44-97)||(44498687-44498740)
chr4 (21-81)||(22070467-22070527)
[»] chr7 (11 HSPs)
chr7 (14-103)||(30334450-30334540)
chr7 (18-94)||(39981544-39981620)
chr7 (18-103)||(47059332-47059417)
chr7 (20-103)||(48312260-48312338)
chr7 (38-103)||(16756089-16756154)
chr7 (18-103)||(47060287-47060372)
chr7 (23-103)||(43441565-43441645)
chr7 (18-92)||(41328449-41328522)
chr7 (19-96)||(22537784-22537861)
chr7 (50-103)||(28325290-28325343)
chr7 (20-96)||(13564053-13564128)
[»] chr2 (8 HSPs)
chr2 (18-103)||(4920871-4920956)
chr2 (18-103)||(13029499-13029584)
chr2 (18-103)||(28611065-28611150)
chr2 (19-92)||(16290605-16290679)
chr2 (35-97)||(43034308-43034370)
chr2 (18-90)||(13030198-13030270)
chr2 (44-83)||(30748719-30748758)
chr2 (20-94)||(102229-102303)
[»] chr1 (17 HSPs)
chr1 (18-94)||(51445818-51445894)
chr1 (19-85)||(9226027-9226093)
chr1 (18-92)||(34350359-34350433)
chr1 (19-92)||(15743466-15743539)
chr1 (18-103)||(35943258-35943343)
chr1 (20-96)||(13894840-13894916)
chr1 (18-100)||(48096845-48096927)
chr1 (18-103)||(3616703-3616788)
chr1 (18-103)||(5612896-5612981)
chr1 (18-103)||(52077956-52078041)
chr1 (18-103)||(14478486-14478571)
chr1 (20-93)||(27556498-27556571)
chr1 (18-97)||(48527759-48527838)
chr1 (18-103)||(26286631-26286716)
chr1 (16-62)||(13895147-13895193)
chr1 (16-97)||(50442830-50442911)
chr1 (21-89)||(15072603-15072671)
[»] scaffold0011 (1 HSPs)
scaffold0011 (18-79)||(127676-127737)
[»] chr5 (6 HSPs)
chr5 (18-94)||(22048946-22049022)
chr5 (18-97)||(1102843-1102922)
chr5 (44-92)||(223455-223503)
chr5 (50-103)||(5976923-5976976)
chr5 (20-97)||(36898791-36898868)
chr5 (42-99)||(10735986-10736043)
[»] scaffold0472 (1 HSPs)
scaffold0472 (18-96)||(576-653)


Alignment Details
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 50810706 - 50810803
Alignment:
Q  6 agaagcaaaggaaagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  50810706 agaagtaaaggaaagaagatgaagaaagagaaaattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatggtcctcctt 50810803  T

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Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 50865158 - 50865061
Alignment:
Q  6 agaagcaaaggaaagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  50865158 agaagtaaaggaaagaagatgaagaaagagaaaattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatggtcctcctt 50865061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 50809665 - 50809575
Alignment:
Q  6 agaagcaaaggaaagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggt 96  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  50809665 agaagtaaatgaaagaagatgaagaaagagaaaattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatggt 50809575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 50866197 - 50866287
Alignment:
Q  6 agaagcaaaggaaagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggt 96  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  50866197 agaagtaaatgaaagaagatgaagaaagagaaaattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatggt 50866287  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 53622956 - 53622871
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||||||||||||||| ||||||||||| | ||||||||| |||   ||||||||||||||||||||||||||||| || ||||||    
T  53622956 aagaagatgaagaaagtgaaaattaattggttgttgttgactcaatgtaagataaaatagacatgcgtaatccaatcgtactcctt 53622871  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 54110098 - 54110175
Alignment:
Q  20 gaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtc 97  Q
    ||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||| | |  ||||||||||||    
T  54110098 gaagatgaagaaagagagaattaattagttgttgttgactcaccataagataaaatagacctacaaaatccaatggtc 54110175  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 11224662 - 11224752
Alignment:
Q  13 aaggaaagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||| |||||||||||||||  ||||||||||||||| ||||||| ||| ||||||||||||||||| || ||||| ||||  ||||||||    
T  11224662 aagggaagaagatgaagaaatggaaaattaattagattttgttgactcatcataagataaaatagacttgtgtaattcaataatcctcctt 11224752  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 44602857 - 44602930
Alignment:
Q  20 gaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaat 93  Q
    |||||||||||| |||| |||||||||| ||||||||| ||||  |||||||||||||||| ||||||||||||    
T  44602857 gaagatgaagaaggagagaattaattagttgttgttgactcactgtaagataaaatagacacgcgtaatccaat 44602930  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 24487134 - 24487216
Alignment:
Q  21 aagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||| |||||||| ||||||||||||| ||||||||| | ||| ||||||||||||||  ||| ||||| |||||||||||||    
T  24487134 aagacgaagaaagggaaaattaattagttgttgttgacttaccgtaagataaaatagatctgcttaatcaaatggtcctcctt 24487216  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 13621224 - 13621139
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||||||||||||||| || || ||||||  ||||||||| ||||| |||||||||||| |  ||||||||||||||  |||||||    
T  13621224 aagaagatgaagaaagggagaaataattaagtgttgttgactcaccgtaagataaaatacatctgcgtaatccaatgaccctcctt 13621139  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 21074109 - 21074170
Alignment:
Q  36 aaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtc 97  Q
    |||||||||||| ||||||||| ||||  ||||||||||||||||||||| || ||||||||    
T  21074109 aaaattaattagttgttgttgactcactgtaagataaaatagacatgcgtgattcaatggtc 21074170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 49380006 - 49379921
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||||||||||||||| || || ||||||  ||||||||| ||||| |||||||||||| |  ||||||||||||||  |||||||    
T  49380006 aagaagatgaagaaagggagaaataattaagtgttgttgactcaccgtaagataaaatacatctgcgtaatccaatgaccctcctt 49379921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 34819096 - 34819174
Alignment:
Q  19 agaagatgaagaaa-gagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggt 96  Q
    |||||||||||||| || ||||  |||||| ||||| || | |||||||||||||||||||| ||| ||||||||||||    
T  34819096 agaagatgaagaaaagaaaaaaaaaattaggtgttggtggtacaccataagataaaatagacttgcctaatccaatggt 34819174  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 10731941 - 10732018
Alignment:
Q  19 agaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggt 96  Q
    ||||||||||||||  |||||  |||||| ||||| |||| |  | ||||||||||||||| ||| ||||||||||||    
T  10731941 agaagatgaagaaaaggaaaaaaaattaggtgttggtgatacttcttaagataaaatagacttgcctaatccaatggt 10732018  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 26886575 - 26886499
Alignment:
Q  19 agaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggt 96  Q
    ||||||||||||||  |||||  |||||| ||||| || | || | ||||||||||||||||||| ||||||||||||    
T  26886575 agaagatgaagaaaatgaaaaa-aattaggtgttggtggtacatcgtaagataaaatagacatgcataatccaatggt 26886499  T

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Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 28420046 - 28420143
Alignment:
Q  6 agaagcaaaggaaagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  28420046 agaagtaaaggaaaaaagatgaagaaagagaaaattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatggccctcctt 28420143  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 28419040 - 28418960
Alignment:
Q  16 gaaagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  28419040 gaaagaagatgaagaaagagaaaattaattagatgttgttgattcaccgtaagataaaataggcatgcgtaatccaatggt 28418960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 42871120 - 42871035
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||||||||||||||| || || ||||||| ||||||||| || |  |||||||||||| ||||||||||| |||||||| |||||    
T  42871120 aagaagatgaagaaagggagaaataattaggtgttgttgactcgcggtaagataaaatacacatgcgtaattcaatggtcatcctt 42871035  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 43202401 - 43202325
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtc 97  Q
    |||||||||||||||| |||||||||||||   ||||||| ||||||||||||| |||| || ||| |||||||||||||    
T  43202401 aagaagatgaagaaagggaaaattaattag---ttgttgactcaccataagatagaatacacctgcataatccaatggtc 43202325  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 31845605 - 31845692
Alignment:
Q  16 gaaagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    ||||| |||||||||||||||| ||||||||  ||||||||| | ||| |||||||||||| || | ||||||| ||||||| |||||    
T  31845605 gaaaggagatgaagaaagagaagattaattacctgttgttgacttaccgtaagataaaatacacctacgtaatctaatggtcatcctt 31845692  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 9854690 - 9854766
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatg 94  Q
    |||||||| ||||||  ||  ||||||||| ||||||||| ||||| |||||||||| | |||||||||||||||||    
T  9854690 aagaagataaagaaaaggaggattaattagttgttgttgactcaccgtaagataaaacacacatgcgtaatccaatg 9854766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 42098867 - 42098791
Alignment:
Q  20 gaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggt 96  Q
    ||||| ||||||||||||||||||||||||||| |||| ||||| ||| || | |||||| ||| |||| |||||||    
T  42098867 gaagaagaagaaagagaaaattaattagatgttattgactcaccgtaaaatcacatagacctgcctaattcaatggt 42098791  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 6398327 - 6398405
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggt 96  Q
    |||||||||||||||  ||||   |||||| ||||||||||||||| ||||||||| ||||| | | ||||||||||||    
T  6398327 aagaagatgaagaaaaggaaataaaattaggtgttgttgattcaccgtaagataaagtagacttacataatccaatggt 6398405  T

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Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 232418 - 232321
Alignment:
Q  6 agaagcaaaggaaagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  232418 agaagtaaatgaaagaagatgaagaaagagaaaattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatggttctcctt 232321  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 233441 - 233538
Alignment:
Q  6 agaagcaaaggaaagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||| |||||||    
T  233441 agaagtaaaggaaagaagatgaagaaagagaaaattaattagatgttgttgattcactgtaagataaaatagacatgtgtaatccaatggccctcctt 233538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 11723091 - 11723006
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||||||||||||||| || || ||||||  ||||||||| ||||| ||||| |||||| || || |||||||||||  |||||||    
T  11723091 aagaagatgaagaaagggagaaataattaagtgttgttgactcaccgtaagagaaaatacacctgtgtaatccaatgaccctcctt 11723006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 17837921 - 17837843
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggt 96  Q
    |||||||||||||||  || ||  |||||||||||| || | || | ||||||||||||||| ||| ||||||||||||    
T  17837921 aagaagatgaagaaaaggacaaaaaattagatgttggtggtacatcgtaagataaaatagacctgcctaatccaatggt 17837843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 29381541 - 29381619
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggt 96  Q
    |||||||||||||||  || ||  |||||||||||| || | || | ||||||||||||||| ||| ||||||||||||    
T  29381541 aagaagatgaagaaaaggacaaaaaattagatgttggtggtacatcgtaagataaaatagacctgcctaatccaatggt 29381619  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 1830058 - 1829969
Alignment:
Q  14 aggaaagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||| ||| | ||||||||||||||| | ||||||| |||||||||||||    
T  1830058 aggaaagaagatgaaggaagggaaaattaattggatgttgttgactcaacgtaagataaaatagacctacgtaatctaatggtcctcctt 1829969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 54485427 - 54485514
Alignment:
Q  16 gaaagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||||||||||||||||||  ||||||||||||||||||||| ||||| ||||||| ||||||||| | ||||| || ||| ||||||    
T  54485427 gaaagaagatgaagaaagaagaaattaattagatgttgttgactcaccgtaagatagaatagacatacataatctaacggttctcctt 54485514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 40723529 - 40723447
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctc 100  Q
    ||||||||||||||| |||||||||||||| |||| | || ||||| |||||||||||| ||  |||||||||||||||||||    
T  40723529 aagaagatgaagaaaaagaaaattaattagttgttatcgactcaccgtaagataaaatacaccagcgtaatccaatggtcctc 40723447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 6349362 - 6349434
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaa 92  Q
    ||||||| |||||||||  ||||||||||| ||||||||| |||||||||||||||||| || ||||||||||||    
T  6349362 aagaagaagaagaaaga--aaattaattagttgttgttgactcaccataagataaaatacacttgcgtaatccaa 6349434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 36845710 - 36845635
Alignment:
Q  22 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtc 97  Q
    |||||||||||||||||| ||||||  ||||||||| | ||| |||||||||||| || |||||||||||||||||    
T  36845710 agatgaagaaagagaaaaataattacctgttgttgacttaccgtaagataaaatacacctgcgtaatccaatggtc 36845635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 38555115 - 38555174
Alignment:
Q  44 ttagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||||||||||||| ||||| |||||||||||||||||| ||||||||||||| ||||||    
T  38555115 ttagatgttgttgactcaccgtaagataaaatagacatgtgtaatccaatggttctcctt 38555174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 54484549 - 54484487
Alignment:
Q  14 aggaaagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaata 76  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||| ||||||| ||||    
T  54484549 aggaaagaagatgaagaaagaaaaaattaattagatgttgttggctcaccgtaagatagaata 54484487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 1520115 - 1520030
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||||||||||||||| || |  ||||||| ||||||||||||||| |||||||||||| || | ||||||| ||||||| |||||    
T  1520115 aagaagatgaagaaagggagacataattaggtgttgttgattcaccgtaagataaaatacacttacgtaatctaatggtcatcctt 1520030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 45535347 - 45535274
Alignment:
Q  20 gaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaat 93  Q
    ||||||||| || |||| |||||||||| ||||||||| ||||  |||||||||||||||| ||||||||||||    
T  45535347 gaagatgaaaaaggagagaattaattagttgttgttgactcactgtaagataaaatagacacgcgtaatccaat 45535274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 52138603 - 52138678
Alignment:
Q  18 aagaagatgaagaaagagaa-aattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaat 93  Q
    ||||||||||||||| |||| |||||||||| |||| |||| ||||| |||||||||||| ||||||||||||||||    
T  52138603 aagaagatgaagaaa-agaagaattaattagttgttattgactcaccgtaagataaaatacacatgcgtaatccaat 52138678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 26630095 - 26630009
Alignment:
Q  17 aaagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||| ||| |||||||||||||||||||||  ||||||||| | ||| |||||||||||| || | ||||||| ||||||| |||||    
T  26630095 aaaggagaggaagaaagagaaaattaattacttgttgttgacttaccgtaagataaaatacacctacgtaatctaatggtcatcctt 26630009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 34327031 - 34326949
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctc 100  Q
    |||| |||||||||| |||||||||||||| |||| | || ||| | |||||||||||| || |||||||| |||||||||||    
T  34327031 aagatgatgaagaaaaagaaaattaattagttgttatcgactcatcgtaagataaaatacacttgcgtaattcaatggtcctc 34326949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 23103822 - 23103895
Alignment:
Q  20 gaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaat 93  Q
    ||||||||| || |||| ||||||| || ||||||||| ||||  |||||||||||||||| ||||||||||||    
T  23103822 gaagatgaaaaaggagagaattaatgagttgttgttgactcactgtaagataaaatagacacgcgtaatccaat 23103895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 27850748 - 27850832
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||||||||||||||| |||| |||||| | |||||||||  |||| |||||||||||||| |||||  |||||||| ||||||||    
T  27850748 aagaagatgaagaaagtgaaagttaattggttgttgttgacacaccgtaagataaaatagatatgcg-catccaatgatcctcctt 27850832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 42810013 - 42810072
Alignment:
Q  17 aaagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaata 76  Q
    ||||||| ||||||||| || || ||||||||||||||||| ||||| ||||||||||||    
T  42810013 aaagaaggtgaagaaagggagaaataattagatgttgttgactcaccgtaagataaaata 42810072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 26496121 - 26496197
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatg 94  Q
    |||||||||||||||| || || ||||||  ||||||||| ||||| |||||||||||| |  || |||||||||||    
T  26496121 aagaagatgaagaaagggagaaataattaagtgttgttgactcaccgtaagataaaatacatctgtgtaatccaatg 26496197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 22069534 - 22069485
Alignment:
Q  24 atgaagaaagagaaaattaattagatgttgttgattcaccataagataaa 73  Q
    ||||| |||| |||||||||||||||||| ||  ||||||||||||||||    
T  22069534 atgaataaagggaaaattaattagatgttttttgttcaccataagataaa 22069485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 44498740 - 44498687
Alignment:
Q  44 ttagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtc 97  Q
    |||| ||||| |||| || | ||||||||||||||||||||||||| |||||||    
T  44498740 ttaggtgttggtgatacatcctaagataaaatagacatgcgtaatctaatggtc 44498687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 22070467 - 22070527
Alignment:
Q  21 aagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacat 81  Q
    |||||||||||||| ||| ||||||| |||||||| ||| |||  |||||||||| |||||    
T  22070467 aagatgaagaaagaaaaagttaattatatgttgttcatttaccggaagataaaatggacat 22070527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 30334450 - 30334540
Alignment:
Q  14 aggaaagaagatgaagaaagagaaaattaattagatgttgttgattcaccat-aagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    ||||||| |||||||||||| ||||||||||| ||||||||||| ||||| | ||||||||||||||||| |||||||||  |||||||||    
T  30334450 aggaaaggagatgaagaaagggaaaattaattggatgttgttgactcaccgtaaagataaaatagacatgggtaatccaagcgtcctcctt 30334540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 39981620 - 39981544
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatg 94  Q
    |||||||||||||||| || ||||| |||| ||||||||| ||||| |||||||||||| |||||||||||||||||    
T  39981620 aagaagatgaagaaagggagaattagttagttgttgttgactcaccgtaagataaaatacacatgcgtaatccaatg 39981544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 47059417 - 47059332
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    ||||||||||||||||||| || |||| || |||| |||| ||||  |||||||||||| |||||||||||||||||||| |||||    
T  47059417 aagaagatgaagaaagagagaaataatcaggtgttattgactcactgtaagataaaatacacatgcgtaatccaatggtcatcctt 47059332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 48312338 - 48312260
Alignment:
Q  20 gaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    ||||||||| ||||||||  ||||||||   ||||||| ||||| ||||||||||||||| ||||||||||||||||| |||||    
T  48312338 gaagatgaaaaaagagaa--ttaattag---ttgttgactcaccgtaagataaaatagacctgcgtaatccaatggtcatcctt 48312260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 16756154 - 16756089
Alignment:
Q  38 aattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||||||||| ||||||||| ||||  |||||||||||| || ||||||||| |||||||||||||    
T  16756154 aattaattagttgttgttgactcactgtaagataaaatacacttgcgtaatctaatggtcctcctt 16756089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 47060287 - 47060372
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||||||| ||||||| || || ||||||| |||||||||  ||||||||||||||||| || || ||||| |||||||| |||||    
T  47060287 aagaagataaagaaagggagaaataattaggtgttgttgacacaccataagataaaatacacttgtgtaattcaatggtcatcctt 47060372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 43441645 - 43441565
Alignment:
Q  23 gatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    ||||||||||||||||| ||||||  | ||||||| | ||| |||||||||||| || ||||||||||||| ||| |||||    
T  43441645 gatgaagaaagagaaaaataattacctattgttgacttaccgtaagataaaatacacttgcgtaatccaatagtcatcctt 43441565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 41328522 - 41328449
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaa 92  Q
    |||||||||||||||| || || ||||||  ||||||||| ||||| |||||||||||| | |||||||||||||    
T  41328522 aagaagatgaagaaag-gagaaataattaagtgttgttgactcaccgtaagataaaatacatatgcgtaatccaa 41328449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 22537861 - 22537784
Alignment:
Q  19 agaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggt 96  Q
    ||||||||||||||  |||||  |||||| ||||| || |||| | ||||||||||||||| ||| ||||||||||||    
T  22537861 agaagatgaagaaaatgaaaaaaaattaggtgttggtggttcatcgtaagataaaatagacctgcataatccaatggt 22537784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 28325343 - 28325290
Alignment:
Q  50 gttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||||||| ||||  ||||||||||||||| |||| ||||||||| ||||||||    
T  28325343 gttgttgactcactgtaagataaaatagacttgcgcaatccaatgatcctcctt 28325290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 13564053 - 13564128
Alignment:
Q  20 gaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggt 96  Q
    |||||||||||||| |||||| |||||| ||||| |  | || |||||| |||||||||||||  ||||||||||||    
T  13564053 gaagatgaagaaagggaaaat-aattaggtgttggtagtacatcataagctaaaatagacatgtctaatccaatggt 13564128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 4920871 - 4920956
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    ||||||||||| |||| || |||||||||| ||||||||| ||||| |||||||||||| || |||||||||||||| ||||||||    
T  4920871 aagaagatgaaaaaagggagaattaattagttgttgttgactcaccgtaagataaaatacacctgcgtaatccaatgatcctcctt 4920956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 13029584 - 13029499
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    ||||||| ||||||||| |||||||||||  | ||||||| ||||| ||||| ||||||||||| ||||||||||||  |||||||    
T  13029584 aagaagacgaagaaagaaaaaattaattaacttttgttgactcaccgtaagagaaaatagacattcgtaatccaatgaccctcctt 13029499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 28611065 - 28611150
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||||||||||||||| || || ||||||  ||||||||| |||||||||||||||||| || |||||||| |||||  |||||||    
T  28611065 aagaagatgaagaaagggagaaataattaagtgttgttgactcaccataagataaaatacacctgcgtaattcaatgaccctcctt 28611150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 16290605 - 16290679
Alignment:
Q  19 agaagatgaagaaagagaaaattaa-ttagatgttgttgattcaccataagataaaatagacatgcgtaatccaa 92  Q
    |||||||||||||| |||||| ||| |||||||||  ||| ||||||||||||||||||||||||| | ||||||    
T  16290605 agaagatgaagaaaaagaaaaataaattagatgttaatgactcaccataagataaaatagacatgcatgatccaa 16290679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 43034308 - 43034370
Alignment:
Q  35 gaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtc 97  Q
    ||||||||||||| |||||||||   ||| ||||||||||||||||||| |||||||||||||    
T  43034308 gaaaattaattagttgttgttgacataccgtaagataaaatagacatgcataatccaatggtc 43034370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 13030198 - 13030270
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatcc 90  Q
    |||||||||||||||| ||||||||||||| |||||| || |||   ||||||||||||||| |||| |||||    
T  13030198 aagaagatgaagaaagggaaaattaattagttgttgtagactcaatgtaagataaaatagacctgcgcaatcc 13030270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 30748758 - 30748719
Alignment:
Q  44 ttagatgttgttgattcaccataagataaaatagacatgc 83  Q
    |||||||||||||||||||||||||||| | |||||||||    
T  30748758 ttagatgttgttgattcaccataagatatactagacatgc 30748719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 102303 - 102229
Alignment:
Q  20 gaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatg 94  Q
    ||||||||||| | |||||   |||||| |||||||| |||||| ||||||||| |||| |||| ||||||||||    
T  102303 gaagatgaagataaagaaataaaattaggtgttgttggttcaccgtaagataaagtagatatgcataatccaatg 102229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 51445894 - 51445818
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatg 94  Q
    |||||||||||||||| || |||||||||| ||||||||| ||||| |||||||||||| || ||||||||||||||    
T  51445894 aagaagatgaagaaagggagaattaattagttgttgttgactcaccgtaagataaaatacacctgcgtaatccaatg 51445818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 9226027 - 9226093
Alignment:
Q  19 agaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgt 85  Q
    |||| |||||||||||||||||||||||||||||  ||| ||||| |||||||||||||||||||||    
T  9226027 agaaaatgaagaaagagaaaattaattagatgttaatgactcaccgtaagataaaatagacatgcgt 9226093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 34350433 - 34350359
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaa 92  Q
    ||||||| |||||||| ||||||||||||| ||||||||| |||||||||||| ||||| || ||||||||||||    
T  34350433 aagaagaagaagaaagtgaaaattaattagttgttgttgactcaccataagattaaatacacttgcgtaatccaa 34350359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 15743539 - 15743466
Alignment:
Q  19 agaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaa 92  Q
    |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| |   |||||||||||    
T  15743539 agaagatgaagaaagaaaaaattaattagttgttgttgactcaccataagataaaatacatccgcgtaatccaa 15743466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 35943258 - 35943343
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    ||||||| ||||||||||| |||||||||||||||  || |||| | ||||||||||||||| |||||||| |||||||| |||||    
T  35943258 aagaagacgaagaaagagataattaattagatgttaatggttcatcgtaagataaaatagacctgcgtaattcaatggtcatcctt 35943343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 13894916 - 13894840
Alignment:
Q  20 gaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggt 96  Q
    |||||||||||||  ||||||||||| | ||||||||||||||  |||||||||||| ||||||||||| |||||||    
T  13894916 gaagatgaagaaatggaaaattaatttgttgttgttgattcacggtaagataaaatacacatgcgtaattcaatggt 13894840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 48096845 - 48096927
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctc 100  Q
    ||||||||||||||| |||||||||||||| |||| | || ||||| |||||||||||| || |  |||||||||||||||||    
T  48096845 aagaagatgaagaaaaagaaaattaattagttgttatcgactcaccgtaagataaaatacacctatgtaatccaatggtcctc 48096927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 3616703 - 3616788
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||||||||||| ||| |  |||||||||| ||||||||| ||||  |||||||||||| || ||||||||| |||||||||||||    
T  3616703 aagaagatgaaggaagggggaattaattagttgttgttgactcactctaagataaaatacacttgcgtaatctaatggtcctcctt 3616788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 5612896 - 5612981
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||||||||||||||| || |  ||||||  |||||||||||||||||||||||||||| || | ||||||| ||||||| |||||    
T  5612896 aagaagatgaagaaagggagacataattaagtgttgttgattcaccataagataaaatacacttacgtaatctaatggtcatcctt 5612981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 52077956 - 52078041
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||||||||||| ||| |  |||||||||| ||||||||| |||| ||||||||||||| || | ||||||| |||||||||||||    
T  52077956 aagaagatgaaggaagggggaattaattagttgttgttgactcactataagataaaatacacttacgtaatctaatggtcctcctt 52078041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 14478571 - 14478486
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||||||||||||||| || || ||||||  ||||||||| ||||| |||||||||||| || |||||||| |||||  |||||||    
T  14478571 aagaagatgaagaaagggagaaataattaagtgttgttgactcaccgtaagataaaatacacctgcgtaattcaatgaccctcctt 14478486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 27556571 - 27556498
Alignment:
Q  20 gaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaat 93  Q
    ||||||||| || |||| |||||||||| ||||||||| ||||  |||||||||||||||| || |||||||||    
T  27556571 gaagatgaataatgagataattaattagttgttgttgactcactgtaagataaaatagacacgcttaatccaat 27556498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 48527838 - 48527759
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtc 97  Q
    |||||||||||||||   |||||||||||| |||| |||| |||||  ||||||||||| || ||| |||||||||||||    
T  48527838 aagaagatgaagaaaagaaaaattaattagttgttattgactcaccggaagataaaatacacttgcataatccaatggtc 48527759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 26286716 - 26286631
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||||||||||||||| || |  ||||||| | ||||||||||||| || ||||||||| || | ||||||| ||||||| |||||    
T  26286716 aagaagatgaagaaagggagacataattaggttttgttgattcaccgtacgataaaatacacttacgtaatctaatggtcatcctt 26286631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 13895147 - 13895193
Alignment:
Q  16 gaaagaagatgaagaaagagaaaattaattagatgttgttgattcac 62  Q
    |||||||||||||||||  ||||||||||| | ||||||||||||||    
T  13895147 gaaagaagatgaagaaatggaaaattaatttgttgttgttgattcac 13895193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 50442911 - 50442830
Alignment:
Q  16 gaaagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtc 97  Q
    |||||||||||||||| | || |  || |||| ||||||| |  |||| ||||||||||||||||| ||||||| |||||||    
T  50442911 gaaagaagatgaagaatgggatatatagttagttgttgttaacccaccgtaagataaaatagacatacgtaatctaatggtc 50442830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 15072603 - 15072671
Alignment:
Q  21 aagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatc 89  Q
    ||||||||||  | |||||| |||||| || ||||| |||||| ||||||||||||||| || ||||||    
T  15072603 aagatgaagagggggaaaataaattagttgatgttggttcaccctaagataaaatagacctgtgtaatc 15072671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 127737 - 127676
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagac 79  Q
    |||||||||||||||| |||| |||||||||||||||||| ||||| |||||||||||||||    
T  127737 aagaagatgaagaaagggaaagttaattagatgttgttgactcaccgtaagataaaatagac 127676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 22048946 - 22049022
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatg 94  Q
    ||||||||||||| || |||||| |||||| || ||||| |||||  ||||||||||||||||||||||||||||||    
T  22048946 aagaagatgaagagagggaaaataaattagctgatgttggttcactgtaagataaaatagacatgcgtaatccaatg 22049022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 1102922 - 1102843
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtc 97  Q
    ||||||||||||||||  |||||||||||| |||| |||| ||||| |||||||||||| || ||| ||||||| |||||    
T  1102922 aagaagatgaagaaaggaaaaattaattagctgttattgactcaccgtaagataaaatacacttgcataatccactggtc 1102843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 223503 - 223455
Alignment:
Q  44 ttagatgttgttgattcaccataagataaaatagacatgcgtaatccaa 92  Q
    |||||||||||||| ||||| |||||||||||||||||| |||||||||    
T  223503 ttagatgttgttgactcaccgtaagataaaatagacatgagtaatccaa 223455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 5976923 - 5976976
Alignment:
Q  50 gttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 103  Q
    |||||||| ||||  ||||||||||||||| |||||||||||||| ||||||||    
T  5976923 gttgttgactcacagtaagataaaatagacttgcgtaatccaatgatcctcctt 5976976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 36898791 - 36898868
Alignment:
Q  20 gaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtc 97  Q
    |||||||||||||   ||||  |||||| ||||| || | || | |||||||||||||||||||||||||||||||||    
T  36898791 gaagatgaagaaaagaaaaaaaaattaggtgttggtggtacatcgtaagataaaatagacatgcgtaatccaatggtc 36898868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 10736043 - 10735986
Alignment:
Q  42 aattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcct 99  Q
    |||||||||||| || | |||||| |||||||||| || ||||||||| |||||||||    
T  10736043 aattagatgttgatggtgcaccattagataaaatacacctgcgtaatcaaatggtcct 10735986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 576 - 653
Alignment:
Q  18 aagaagatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggt 96  Q
    |||||||||||||||  ||||   |||||| ||||||||||||||  ||||||||| ||||| ||| ||||||||||||    
T  576 aagaagatgaagaaaaggaaataaaattaggtgttgttgattcacagtaagataaagtagac-tgcataatccaatggt 653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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