View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21408_low_17 (Length: 343)
Name: NF21408_low_17
Description: NF21408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21408_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 48633581 - 48633257
Alignment:
| Q |
18 |
caaattagaaatgtctttcgacgtgcttatttgcactgatt--aatcatgtaaatagcgtgtgcgatatctagttttttcaccaattcacatctacatcc |
115 |
Q |
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| T |
48633581 |
caaattagaaatgtctttcgacgtgcttatttgcaatgattttaatcatgtaaatagcgtttgcgatatctagttttttcaccaattcacatctacatcc |
48633482 |
T |
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| Q |
116 |
accaaatccaaaagcattaattaatatacttatattccaaacttttgatgtataattagttactctatatagggtcttaggatcactatatataaagtaa |
215 |
Q |
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| T |
48633481 |
accaaatccaaaagcattaattaatatacttatattccaaacttttgatgtataattagttactctatatagggtcttaggatcactatatataaagtaa |
48633382 |
T |
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| Q |
216 |
caacattgttgaaaggaaaattaggcaatcatgggcaattaatttataaagtcaataatgggattttcatcaatctagttaaaattatatttcaagatat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48633381 |
caacattgttgaaaggaaaattaggcaatcatgggcaattaatttataaagtcaataatgggattttcatcaatctagttaaaattatatttcaagatat |
48633282 |
T |
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| Q |
316 |
gataaccactaagtattatctaccc |
340 |
Q |
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| T |
48633281 |
gataaccactaagtagtatcaaccc |
48633257 |
T |
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