View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21408_low_2 (Length: 682)
Name: NF21408_low_2
Description: NF21408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21408_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 626; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 20 - 665
Target Start/End: Original strand, 9935172 - 9935817
Alignment:
| Q |
20 |
atgaaggtggcgttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaaacttgattttgaggcatggagacaggagttgaatgtgcaga |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9935172 |
atgaaggtggcgttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaaacttgattttgaggcatggagacaggagttgaatgtgcaga |
9935271 |
T |
|
| Q |
120 |
agctgaaatttcctcttgcttttaagagatttgagaatgccatttcgcctcaatatgcaattaagatgcttgaagagttaactaatggtgatgctattgt |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9935272 |
agctgaaatttcctcttgcttttaagagatttgagaatgccatttcgcctcaatatgcaattaagatgcttgaagagttaactaatggtgatgctattgt |
9935371 |
T |
|
| Q |
220 |
tactactggtgttggacaacatcaaatgtgggctgctcaattttacaaatacaagagacctaggcagtggttaacttccggtggacttggtgctatgggt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
9935372 |
tactactggtgttggacaacatcaaatgtgggctgctcaattctacaaatacaagagacctaggcagtggttaacttctggtggacttggtgcaatgggt |
9935471 |
T |
|
| Q |
320 |
ttcggattacctgctgcaattggtgccgcaattgctaaccctaatgccatcgttgttgacattgacggagatggtagttttttgatgaatgttcaagagt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9935472 |
ttcggattacctgctgcaattggtgccgcaattgctaaccctaatgccatcgttgttgacattgacggagatggtagttttttgatgaatgttcaagagt |
9935571 |
T |
|
| Q |
420 |
tagctactataagagcggaaaatattccggtgaagataatgttgttgaataatcaacatttgggaatggttgttcaacgggaagatagattctaccggtc |
519 |
Q |
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| T |
9935572 |
tagctactataagagcggaaaatattccggtgaagataatgttgttgaataatcaacatttgggaatggttgttcaacgggaagatagattctaccggtc |
9935671 |
T |
|
| Q |
520 |
aaatagaggtcatacttatcttggagacccttctaggaaagaagagatttttccgaacatgcttggatttgcaaatgcttgtggaatacctgcggctcgt |
619 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9935672 |
aaatagaggtcatacttatcttggagacccttctaggaaagaggagatttttccgaacctgcttggatttgcaaatgcttgtggaatacctgcggctcgt |
9935771 |
T |
|
| Q |
620 |
gtgacaaaagaggaagagcttagagaagctattaagaagatgttgg |
665 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9935772 |
gtgacaaaagaggaagagcttagagaagctattaagaagatgttgg |
9935817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 223 - 492
Target Start/End: Original strand, 3472799 - 3473068
Alignment:
| Q |
223 |
tactggtgttggacaacatcaaatgtgggctgctcaattttacaaatacaagagacctaggcagtggttaacttccggtggacttggtgctatgggtttc |
322 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||| | ||||||||||| ||||||||||| || || | ||| ||||| |||||||| || |
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| T |
3472799 |
tactggtgttggacaacatcagatgtgggctgctcagttttataggtacaagagaccaaggcagtggttgacatctgctggtcttggcgctatgggattt |
3472898 |
T |
|
| Q |
323 |
ggattacctgctgcaattggtgccgcaattgctaaccctaatgccatcgttgttgacattgacggagatggtagttttttgatgaatgttcaagagttag |
422 |
Q |
| |
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||||| || ||||| || || || || |||| || || | || || || |||||||| || || ||||| |||||| ||||||||||||| || || | |
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| T |
3472899 |
ggattgccggctgccatgggagctgctgttgccaatcccgacgctattgtggttgacatcgatggtgatggaagttttatgatgaatgttcaggaattgg |
3472998 |
T |
|
| Q |
423 |
ctactataagagcggaaaatattccggtgaagataatgttgttgaataatcaacatttgggaatggttgt |
492 |
Q |
| |
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||||||| | | ||| ||| | || || |||||| ||||||||||||||||||| ||||| |||||||| |
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| T |
3472999 |
ctactatcaaggtggagaatctccctgttaagatattgttgttgaataatcaacacttgggtatggttgt |
3473068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 459 - 579
Target Start/End: Original strand, 9924712 - 9924832
Alignment:
| Q |
459 |
tgttgttgaataatcaacatttgggaatggttgttcaacgggaagatagattctaccggtcaaatagaggtcatacttatcttggagacccttctaggaa |
558 |
Q |
| |
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|||||||||||||| ||||||||||||||||| ||| |||| ||||||||||||| ||| || | |||||||||||||||||||||||||| |||| | |
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|
| T |
9924712 |
tgttgttgaataattaacatttgggaatggttactcagtgggaggatagattctaccagtccaacaaaggtcatacttatcttggagacccttgtaggca |
9924811 |
T |
|
| Q |
559 |
agaagagatttttccgaacat |
579 |
Q |
| |
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||| ||||||||||||||||| |
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| T |
9924812 |
agacgagatttttccgaacat |
9924832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 20 - 665
Target Start/End: Original strand, 45477118 - 45477763
Alignment:
| Q |
20 |
atgaaggtggcgttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaaacttgattttgaggcatggagacaggagttgaatgtgcaga |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
45477118 |
atgaaggtggcgttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaagcttgattttgaggcatggaggcaggagttgaatgtgcaga |
45477217 |
T |
|
| Q |
120 |
agctgaaatttcctcttgcttttaagagatttgagaatgccatttcgcctcaatatgcaattaagatgcttgaagagttaactaatggtgatgctattgt |
219 |
Q |
| |
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|| | ||||||||||||| |||||||| ||||||| |||| ||||||||||| ||||| ||| || ||||||| ||||| || |||||||| |||||||| |
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| T |
45477218 |
agttaaaatttcctcttggttttaagacatttgaggatgctatttcgcctcagtatgctattcaggtgcttgatgagttgacgaatggtgacgctattgt |
45477317 |
T |
|
| Q |
220 |
tactactggtgttggacaacatcaaatgtgggctgctcaattttacaaatacaagagacctaggcagtggttaacttccggtggacttggtgctatgggt |
319 |
Q |
| |
|
|| ||||||||||||||| |||||||||||| ||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
45477318 |
tagtactggtgttggacagcatcaaatgtggtctgctcagttttacaagtataagagacctaggcagtggttaacttctggtggacttggtgccatgggt |
45477417 |
T |
|
| Q |
320 |
ttcggattacctgctgcaattggtgccgcaattgctaaccctaatgccatcgttgttgacattgacggagatggtagttttttgatgaatgttcaagagt |
419 |
Q |
| |
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|| |||||||||||||| || ||||| || ||||||||||| |||| || || ||||| |||||||| |||||||||||| ||||||| |||||||||| |
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| T |
45477418 |
tttggattacctgctgctatcggtgctgctgttgctaaccctgatgcaattgtcgttgatattgacggggatggtagttttatgatgaacgttcaagagt |
45477517 |
T |
|
| Q |
420 |
tagctactataagagcggaaaatattccggtgaagataatgttgttgaataatcaacatttgggaatggttgttcaacgggaagatagattctaccggtc |
519 |
Q |
| |
|
||||||||||||||| || ||| ||||||| ||||| ||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| | | |
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|
| T |
45477518 |
tagctactataagagtagagaatcttccggttaagatcctgttgttgaataatcaacatttgggtatggttgttcaatgggaggatagattctacaaggc |
45477617 |
T |
|
| Q |
520 |
aaatagaggtcatacttatcttggagacccttctaggaaagaagagatttttccgaacatgcttggatttgcaaatgcttgtggaatacctgcggctcgt |
619 |
Q |
| |
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|||||||| ||||||||||||||| |||||||||| | | || |||||||| || ||||||||||||||||| |||| ||||||||||| || |||||| |
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|
| T |
45477618 |
aaatagagctcatacttatcttggtgacccttctaaggaggatgagattttccctaacatgcttggatttgctgatgcctgtggaataccggctgctcgt |
45477717 |
T |
|
| Q |
620 |
gtgacaaaagaggaagagcttagagaagctattaagaagatgttgg |
665 |
Q |
| |
|
||||| || ||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
45477718 |
gtgaccaagaaggaagagcttagagaagctattcagaaaatgttgg |
45477763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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