View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21408_low_25 (Length: 279)
Name: NF21408_low_25
Description: NF21408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21408_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 8139175 - 8139426
Alignment:
| Q |
1 |
cagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatctttctcatttatttaaaaatcttgatcatttatttctgcaatc |
100 |
Q |
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| T |
8139175 |
cagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatctttctcatttatttaaaaatcttgatcatttatttctgcaatc |
8139274 |
T |
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| Q |
101 |
atgatcatttccatgaatgatgaatctgtgtttttgaagcgcatctgttgannnnnnnnnnnnnnnnattgagtctttgttactgaatgcatgcttgaat |
200 |
Q |
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| T |
8139275 |
atgatcatttctatgaatgatgaatctgtgtttttgaagcgcatctgttgatttttttt---------tttagtctttgttactgaatgcatgcttgaat |
8139365 |
T |
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| Q |
201 |
atcactgtttttggaacgatgtctctgctcttgtatgagtcttgatcatttactaatgttt |
261 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8139366 |
atcactgtttttggaatgatgtctctgctcttgtatgagtcttgatcatttagtaatgttt |
8139426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 49 - 261
Target Start/End: Complemental strand, 7499701 - 7499498
Alignment:
| Q |
49 |
gtaaaaatctttctcatttatttaaaaatcttgatcatttatttctgcaatcatgatcatttccatgaatgatgaatctgtgtttttgaagcgcatctgt |
148 |
Q |
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| T |
7499701 |
gtaaaaatcttaatcatttatctaaaaatctttatcatttatttctgcaatcatgatcacttctatgaatgatgaatctgtgtttt-gaagctcatctgt |
7499603 |
T |
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| Q |
149 |
tgannnnnnnnnnnnnnnnattgagtctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtctctgctcttgtatgagtcttgatca |
248 |
Q |
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| T |
7499602 |
tgattttttttt--------ttgagtctttgttactgaatgcatgcttgaacatcactgtttttggaatgatgtttctgctcttttatgagtcttgatca |
7499511 |
T |
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| Q |
249 |
tttactaatgttt |
261 |
Q |
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| || |||||||| |
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| T |
7499510 |
tgtagtaatgttt |
7499498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 7503102 - 7502967
Alignment:
| Q |
1 |
cagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatct---ttctcatttatttaaaaatcttgatcatttatttctgca |
97 |
Q |
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|||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| | | |||||||| ||||||| ||||||||||||||||||| |
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| T |
7503102 |
cagttttttatgtttcttgatcattaagtaaaaatcctgatcatttatgtaaaaatatcattaatcatttatgtaaaaatattgatcatttatttctgca |
7503003 |
T |
|
| Q |
98 |
atc--atgatcatttccatgaatgatgaatctgtgt |
131 |
Q |
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| T |
7503002 |
atcatatgatcacttctatgaatgatgaatctgtgt |
7502967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 7502928 - 7502878
Alignment:
| Q |
174 |
tctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtct |
224 |
Q |
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| T |
7502928 |
tctttgttactgattgcatgcttggatatcactgtttttggaatgatgtct |
7502878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 7503160 - 7503119
Alignment:
| Q |
89 |
atttctgcaatcatgatcatttccatgaatgatgaatctgtg |
130 |
Q |
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| T |
7503160 |
atttctgcaatcatgatcacttctatgaatgatgaatttgtg |
7503119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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