View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21408_low_3 (Length: 620)
Name: NF21408_low_3
Description: NF21408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21408_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 34 - 521
Target Start/End: Original strand, 24363028 - 24363510
Alignment:
| Q |
34 |
caaacatttaca-tttacttatacgtatgtactacatctttgaatattactagccataagctaaaatttgttataaaacttccaaacacataaggcttca |
132 |
Q |
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| T |
24363028 |
caaacatttacaatttacttatacatacgtactacatctttgaatattactagccataagctaaaatttgttataaaacttccaaacacataaggcttca |
24363127 |
T |
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| Q |
133 |
gcttttgtatgctttctctatactgcatgttatcttgccaaagtttagctctattcttattcaagttgattacctcataagtaagcaagcatgactttag |
232 |
Q |
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| T |
24363128 |
gcttttctatgctttctctatactgcatgttatcttgccaaagtttagctctattcttattcaagttgattacctcataagtaagcaagcatgactttag |
24363227 |
T |
|
| Q |
233 |
ttagataagaggggtcctaccaacaacaactttccaatacaaaactatcaataaattaagaaagtgcaaccaccaaagtaacgaactatctaaaggtagt |
332 |
Q |
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| T |
24363228 |
ttagataagaggggtcctaccaacaacaactttccaatacaaaactatcaataaattaagaaagtgcaaccaccaaagtaacgaactatctaaaggtagt |
24363327 |
T |
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| Q |
333 |
ggccctatgatacattaacnnnnnnnnnnnnnaaatgagcaacaaaatcaacatggaaaaatgtgatagttagacaagtataattaatgaataagcaaat |
432 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24363328 |
ggccctatgatacattaa------ttttttttaaatgagcaacaaaatcaacatggaaaaatgtgatagttagacaagtataattaatgaataagcaaat |
24363421 |
T |
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| Q |
433 |
tagtagtatgagtgttttacacttatttgaaatatatcacaatgtaaatttgagggtcctggatcctctactgcagcactcacaatagg |
521 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24363422 |
tagtactatgagtgttttacacttatttaaaatatatcacaatgtaaatttgagggtcctggatcctctactgcagcactcacaatagg |
24363510 |
T |
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